Dbfetch
ID KJ857482; SV 1; linear; genomic DNA; STD; HUM; 4585 BP. XX AC KJ857482; XX DT 24-AUG-2014 (Rel. 121, Created) DT 24-AUG-2014 (Rel. 121, Last updated, Version 1) XX DE Homo sapiens MHC class I antigen (HLA-B) gene, HLA-B27new allele, complete DE cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-4585 RA Wang J., Kostur C., Anderson J., Zeeben S., Larlee K., Stamm L., Khan F., RA Berka N.; RT "Identification of a new HLA-B27 allele"; RL Unpublished. XX RN [2] RP 1-4585 RA Wang J., Kostur C., Anderson J., Zeeben S., Larlee K., Stamm L., Khan F., RA Berka N.; RT ; RL Submitted (20-MAY-2014) to the INSDC. RL Tissue Typing Laboratory, Calgary Laboratory Services, 9-3535 Research Road RL NW, Calgary, Alberta T2L 2K8, Canada XX DR MD5; e3d0868182c9a504461fb43daa485d26. DR IMGT/HLA; HLA-B*27:131; HLA12072. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4585 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /isolation_source="clinical sample" FT /db_xref="taxon:9606" FT gene <884..>3560 FT /gene="HLA-B" FT /allele="HLA-B27new" FT mRNA join(<884..956,1086..1355,1600..1875,2451..2726,2820..2936, FT 3378..3410,3517..>3560) FT /gene="HLA-B" FT /allele="HLA-B27new" FT /product="MHC class I antigen" FT CDS join(884..956,1086..1355,1600..1875,2451..2726,2820..2936, FT 3378..3410,3517..3560) FT /codon_start=1 FT /gene="HLA-B" FT /allele="HLA-B27new" FT /product="MHC class I antigen" FT /db_xref="GOA:A0A076V2Z0" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:A0A076V2Z0" FT /protein_id="AIK19711.1" FT /translation="MRVTAPRTLLLLLWGAVALTETWAGSHSMRYFHTSVSRPGRGEPR FT FITVGYVDDTLFVRFDSDAASPREEPRAPWIEQEGPEYWDRETQICKAKAQTYRESLRT FT LLRYYNQSEAGSHTLQNMYGCDVGPDGRLLRGYHQDAYDGKDYIALNEDLSSWTAADTA FT AQITQRKWEAARVAEQLRAYLEGECVEWLRRYLENGKETLQRADPPKTHVTHHPISDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGK FT GGSYSQAACSDSAQGSDVSLTA" XX SQ Sequence 4585 BP; 912 A; 1255 C; 1376 G; 1042 T; 0 other; cccggttgca atagacagta acaaaccccc cttctttata ttcaggagat gttctggact 60 catataggga aactcggggt ggggaatgaa gataatttta aatgcaacaa cccagagtca 120 cagatccata gtctgggaaa gtaaaactta ggagctttga gagtttaatt gtaatgctgt 180 tttgacacag gtcttttgca gattggaatt ctaatcattc agggattacc aatattgtgc 240 tacctactgt attaataaac aaaaaggaaa ctggtctcta tgagaatctc tgtgtggtgg 300 cttcagacaa aacttcgcca ggtttagaga gaaaacccct gtctctacac ctccattccc 360 agggcgagct cactctctgg catcaagttc tccgtgatca gtttccctac acaagatcca 420 agaggagagg taaggagtga gaggcaggga gtccagttca gggacaggga ttccaggagg 480 agaagtgaag gggaagcggg tgggcgcagc ctgggggtct ctccctggtt tccacagaca 540 gatccttgtg ccggactcag gcagacagtg tgacaaagag gctggtgtag gagaagaggg 600 atcaggacga agtcccaggc cccgggcggg gctctcaggg tctcaggctc cgagagcctt 660 gtctgcattg gggaggcgca gcattgggga ttccccactc ccacgagttt cacttcttct 720 cccaacctat gtcgggtcct tcttccagga tactcgtgac gcgtccccat ttcccactcc 780 cattgggtgt cgggtgtcta gagaagccaa tcagtgtcgc cggggtccca gttctaaagt 840 ccccacgcac ccacccggac tcagaatctc ctcagacgcc gagatgcggg tcacggcgcc 900 ccgaaccctc ctcctgctgc tctggggggc agtggccctg accgagacct gggctggtga 960 gtgcggggtc ggcagggaaa tggcctctgt ggggaggagc gaggggaccg caggcggggg 1020 cgcaggaccc ggggagccgc gccgggagga gggtcgggcg ggtctcagcc cctcctcgcc 1080 cccaggctcc cactccatga ggtatttcca cacctccgtg tcccggcccg gccgcgggga 1140 gccccgcttc atcaccgtgg gctacgtgga cgacacgctg ttcgtgaggt tcgacagcga 1200 cgccgcgagt ccgagagagg agccgcgggc gccgtggata gagcaggagg ggccggagta 1260 ttgggaccgg gagacacaga tctgcaaggc caaggcacag acttaccgag agagcctgcg 1320 gaccctgctc cgctactaca accagagcga ggccggtgag tgaccccggc ccggggcgca 1380 ggtcacgact ccccatcccc cacgtacggc ccgggtcgcc ccgagtctcc gggtccgaga 1440 tccgcccccg aggccgcggg acccgcccag accctcgacc ggcgagagcc ccaggcgcgt 1500 ttacccggtt tcattttcag ttgaggccaa aatccccgcg ggttggtcgg ggcggggcgg 1560 ggctcggggg gacggggctg accgcggggg cggggccagg gtctcacacc ctccagaata 1620 tgtatggctg cgacgtgggg ccggacgggc gcctcctccg cgggtaccac caggacgcct 1680 acgacggcaa ggattacatc gccctgaacg aggacctgag ctcctggacc gccgcggaca 1740 cggcggctca gatcacccag cgcaagtggg aggcggcccg tgtggcggag cagctgagag 1800 cctacctgga gggcgagtgc gtggagtggc tccgcagata cctggagaac gggaaggaga 1860 cgctgcagcg cgcgggtacc aggggcagtg gggagccttc cccatctcct ataggtcgcc 1920 ggggatggcc tcccacgaga agaggaggaa aatgggatca gcgctagaat gtcgccctcc 1980 cttgaatgga gaatggcatg agttttcctg agtttcctct gagggccccc tcttctctct 2040 aggacaatta agggatgacg tctctgagga aatggagggg aagacagtcc ctagaatact 2100 gatcaggggt cccctttgac ccctgcagca gccttgggaa ccgtgacttt tcctctcagg 2160 ccttgttctc tgcctcacac tcagtgtgtt tggggctctg attccagcac ttctgagtca 2220 ctttacctcc actcagatca ggagcagaag tccctgttcc ccgctcagag actcgaactt 2280 tccaatgaat aggagattat cccaggtgcc tgcgtccagg ctggtgtctg ggttctgtgc 2340 cccttcccca ccccaggtgt cctgtccatt ctcaggctgg tcacatgggt ggtcctaggg 2400 tgtcccatga gagatgcaaa gcgcctgaat tttctgactc ttcccatcag accccccaaa 2460 gacacacgtg acccaccacc ccatctctga ccatgaggcc accctgaggt gctgggccct 2520 gggcttctac cctgcggaga tcacactgac ctggcagcgg gatggcgagg accaaactca 2580 ggacactgag cttgtggaga ccagaccagc aggagataga accttccaga agtgggcagc 2640 tgtggtggtg ccttctggag aagagcagag atacacatgc catgtacagc atgaggggct 2700 gccgaagccc ctcaccctga gatggggtaa ggagggggat gaggggtcat atctcttctc 2760 agggaaagca ggagcccttc agcagggtca gggcccctca tcttcccttc ctttcccaga 2820 gccgtcttcc cagtccaccg tccccatcgt gggcattgtt gctggcctgg ctgtcctagc 2880 agttgtggtc atcggagctg tggtcgctgc tgtgatgtgt aggaggaaga gctcaggtag 2940 ggaaggggtg aggggtgggg tctgagtttt cttgtcccac tgggggtttc aagccccagg 3000 tagaagtgtt ccctgcctca ttactgggaa gcagcatcca cacaggggct aacgcagcct 3060 gggaccctgt gtgccagcac ttactctttt gtgcagcaca tgtgacaatg aaggacggat 3120 gtatcacctt ggtggttgtg gtgttggggt cctgattcca gcattcatga gtcaggggaa 3180 ggtccctgct aaggacagac cttaggaggg cagttggtcc aggacccaca cttgctttcc 3240 tcgtgtttcc tgatcctgcc ttgggtctgt agtcatactt ctggaaattc cttttgggtc 3300 caagacgagg aggttcctct aagatctcat ggccctgctt cctcccagtc ccctcacagg 3360 gcattttctt cccacaggtg gaaaaggagg gagctactct caggctgcgt gtaagtgatg 3420 ggggtgggag tgtggaggag ctcacccacc ccctaattcc tcctgtccca cgtctcctgc 3480 gggctctgac caggtcctgt ttttgttcta ctccaggcag cgacagtgcc cagggctctg 3540 atgtgtctct cacagcttga aaaggtgaga ttcttggggt ctagagtggg tggggtggca 3600 ggtctggggg tgggtggggc agtggggaaa ggcctgggta atggagattc tttgattggg 3660 atgtttcgcg tgtgtggtgg gctgtttaga ctgtcatcac ttaccatgac taaccagaat 3720 ttgttcatga ctgttgtttt ctgtagcctg agacagctgt cttgtgaggg actgagatgc 3780 aggatttctt cacgcctccc ctttgtgact tcaagagcct ctggcatctc tttctgcaaa 3840 ggcacctgaa tgtgtctgcg tccctgttag cataatgtga ggaggtggag agaccagccc 3900 acccccgtgt ccactgtgac ccctgttccc atgctgacct gtgtttcctc cccagtcatc 3960 tttcctgttc cagagaggtg gggctggatg tctccatctc tgtctcaact ttatgtgcac 4020 tgagctgcaa cttcttactt ccctactgaa aataagaatc tgaatataaa tttgttttct 4080 caaatatttg ctatgagagg ttgatggatt aattaaataa gtcaattcct ggaatttgag 4140 agagcaaata aagacctgag aaccttccag aatctgcatg ttcgctgtgc tgagtctgtt 4200 gcaggtgggg tgtggagaag gctgtggggg gccgagtgtg gacggggcct gtgcccattt 4260 ggtgttgagt ccatcatggg ctttatgtgg ttagtcctca gctgggtcac cttcactgct 4320 ccattgtcct tgtcccttca gtggaaactt gtccagcggg agctgtgacc acagaggctc 4380 acacatcgcc ctgggcggcc cctgcacacg ggggtctctg tgcattctga gacaaatttt 4440 cagagccatt cacctcttgc cctgcttcta gagctccttt tctgctctgc tctcctgccc 4500 tctctccctg ccctggttct agtgatcttg gtgctgaatc caatcccaac tcatgaatct 4560 gtaaagcaga gtctaattta gactt 4585 //