Dbfetch

Dbfetch

ID   KF946535; SV 2; linear; genomic DNA; STD; HUM; 1755 BP.
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AC   KF946535;
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DT   23-JAN-2014 (Rel. 119, Created)
DT   16-JAN-2015 (Rel. 123, Last updated, Version 2)
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DE   Homo sapiens isolate BY01173 MHC class I antigen (HLA-C) gene,
DE   HLA-C*07:02:01:01 variant allele, exons 2 through 4 and partial cds.
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KW   .
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RP   1-1755
RA   Lazaro A.M., Chen M., Hou L., Hurley C.K.;
RT   "Novel HLA class I allele";
RL   Unpublished.
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RN   [2]
RP   1-1755
RA   Lazaro A.M., Chen M., Hou L., Hurley C.K.;
RT   ;
RL   Submitted (09-DEC-2013) to the INSDC.
RL   Oncology, Georgetown University, 3970 Reservoir Rd, N.W., Washington, DC
RL   20057, USA
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RN   [3]
RC   Sequence update by submitter
RP   1-1755
RA   Lazaro A.M., Chen M., Hou L., Hurley C.K.;
RT   ;
RL   Submitted (15-JAN-2015) to the INSDC.
RL   Oncology, Georgetown University, 3970 Reservoir Rd, N.W., Washington, DC
RL   20057, USA
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DR   MD5; fc1f26225e514d8ce5949411f2c20f22.
DR   IMGT/HLA; HLA-C*15:02:26; HLA14600.
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CC   On Jan 15, 2015 this sequence version replaced gi:574614413.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1755
FT                   /organism="Homo sapiens"
FT                   /isolate="BY01173"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gene            <1..>1755
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*07:02:01:01 variant"
FT   mRNA            join(<1..270,517..792,1480..>1755)
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*07:02:01:01 variant"
FT                   /product="MHC class I antigen"
FT   CDS             join(<1..270,517..792,1480..>1755)
FT                   /codon_start=3
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*07:02:01:01 variant"
FT                   /product="MHC class I antigen"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="InterPro:IPR037055"
FT                   /db_xref="UniProtKB/TrEMBL:W0NQ35"
FT                   /protein_id="AHG52881.2"
FT                   /translation="SHSMRYFYTAVSRPGRGEPHFIAVGYVDDTQFVRFDSDAASPRGE
FT                   PRAPWVEQEGPEYWDRETQNYKRQAQTDRVNLRKLRGYYNQSEAGSHIIQRMYGCDLGP
FT                   DGRLLRGHDQLAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQLRAYLEGTC
FT                   VEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQRDGED
FT                   QTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRW"
FT   exon            1..270
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*07:02:01:01 variant"
FT                   /number=2
FT   gap             271..516
FT                   /estimated_length=246
FT   exon            517..792
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*07:02:01:01 variant"
FT                   /number=3
FT   gap             793..1479
FT                   /estimated_length=687
FT   exon            1480..1755
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*07:02:01:01 variant"
FT                   /number=4
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SQ   Sequence 1755 BP; 176 A; 251 C; 283 G; 112 T; 933 other;
     gctcccactc catgaggtat ttctacaccg ctgtgtcccg gcccggccgc ggagagcccc        60
     acttcatcgc agtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg       120
     cgagtccaag aggggagccg cgggcgccgt gggtggagca ggaggggccg gagtattggg       180
     accgggagac acagaactac aagcgccagg cacagactga ccgagtgaac ctgcggaaac       240
     tgcgcggcta ctacaaccag agcgaagccg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       360
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       420
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       480
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnggtc tcacatcatc cagaggatgt       540
     atggctgcga cctggggccc gacgggcgcc tcctccgcgg gcatgaccag ttagcctacg       600
     acggcaagga ttacatcgcc ctgaacgagg acctgcgctc ctggaccgcc gcggacacgg       660
     cggctcagat cacccagcgc aagtgggagg cggcccgtga ggcggagcag ctgagagcct       720
     acctggaggg cacgtgcgtg gagtggctcc gcagatacct ggagaacggg aaggagacgc       780
     tgcagcgcgc ggnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       840
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       900
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       960
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1020
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1080
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1140
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1320
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1380
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1440
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnna acacccaaag acacacgtga      1500
     cccaccatcc cgtctctgac catgaggcca ccctgaggtg ctgggccctg ggcttctacc      1560
     ctgcggagat cacactgacc tggcagcggg atggcgagga ccaaactcag gacaccgagc      1620
     ttgtggagac caggccagca ggagatggaa ccttccagaa gtgggcagct gtggtggtgc      1680
     cttctggaga agagcagaga tacacgtgcc atgtgcagca cgaggggctg ccggagcccc      1740
     tcaccctgag atggg                                                       1755
//