Dbfetch

Dbfetch

ID   KF270574; SV 1; linear; genomic DNA; STD; HUM; 1101 BP.
XX
AC   KF270574;
XX
DT   01-OCT-2013 (Rel. 118, Created)
DT   17-AUG-2014 (Rel. 121, Last updated, Version 2)
XX
DE   Homo sapiens MHC class II antigen (HLA-DRB1) gene, HLA-DRB1*12:02:06
DE   allele, exons 2 through 6 and partial cds.
XX
KW   .
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-1101
RA   Li J., Qu J.H., Zhang C.F., Huang C.J., Tan J.W., Li Y.X., Tan Y.J., Ye K.,
RA   Fang J.B., Yang X.Q., Zhou M.Z., Zeng H., Lan Z.H.;
RT   "14 novel HLA-DRB1 alleles found by BGI in 2011 year";
RL   Unpublished.
XX
RN   [2]
RP   1-1101
RA   Li J., Qu J.H., Zhang C.F., Huang C.J., Tan J.W., Li Y.X., Tan Y.J., Ye K.,
RA   Fang J.B., Yang X.Q., Zhou M.Z., Zeng H., Lan Z.H.;
RT   ;
RL   Submitted (20-JUN-2013) to the INSDC.
RL   Healthcare, BGI, Third Floor, BGI Second Building, Beishan Industrial Zone,
RL   Beishan Road, Yantian District, Shenzhen, Guangdong 518083, China
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DR   MD5; f25639ca21dbc4f22f6a2ee1e2c31eae.
DR   IMGT/HLA; HLA-DRB1*12:02:06; HLA11077.
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CC   ##Assembly-Data-START##
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..1101
FT                   /organism="Homo sapiens"
FT                   /isolate="D11049076"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gene            <1..>1101
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*12:02:06"
FT   mRNA            join(<1..270,371..652,753..863,964..987,1088..>1101)
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*12:02:06"
FT                   /product="MHC class II antigen"
FT   CDS             join(<1..270,371..652,753..863,964..987,1088..1101)
FT                   /codon_start=3
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*12:02:06"
FT                   /product="MHC class II antigen"
FT                   /note="antigen presentation protein"
FT                   /db_xref="GOA:U3PRP5"
FT                   /db_xref="InterPro:IPR000353"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR014745"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="UniProtKB/TrEMBL:U3PRP5"
FT                   /protein_id="AGW50707.1"
FT                   /translation="RFLEYSTGECYFFNGTERVRLLERHFHNQEELLRFDSDVGEFRAV
FT                   TELGRPVAESWNSQKDFLEDRRAAVDTYCRHNYGAVESFTVQRRVHPKVTVYPSKTQPL
FT                   QHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSG
FT                   EVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGH
FT                   SGLQPRGFLS"
FT   exon            1..270
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*12:02:06"
FT                   /number=2
FT   gap             271..370
FT                   /estimated_length=unknown
FT   exon            371..652
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*12:02:06"
FT                   /number=3
FT   gap             653..752
FT                   /estimated_length=unknown
FT   exon            753..863
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*12:02:06"
FT                   /number=4
FT   gap             864..963
FT                   /estimated_length=unknown
FT   exon            964..987
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*12:02:06"
FT                   /number=5
FT   gap             988..1087
FT                   /estimated_length=unknown
FT   exon            1088..>1101
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*12:02:06"
FT                   /number=6
XX
SQ   Sequence 1101 BP; 151 A; 176 C; 228 G; 146 T; 400 other;
     cacgtttctt ggagtactct acgggtgagt gttatttctt caatgggacg gagcgggtgc        60
     ggttactgga gagacacttc cataaccagg aggagctcct gcgcttcgac agcgacgtgg       120
     gggagttccg ggcggtgacg gagctggggc ggcctgtcgc ggagtcctgg aacagccaga       180
     aggacttcct ggaagacagg cgcgccgcgg tggacaccta ttgcagacac aactacgggg       240
     ctgtggagag cttcacagtg cagcggcgag nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       360
     nnnnnnnnnn tccatcctaa ggtgactgtg tatccttcaa agacccagcc cctgcagcac       420
     cacaacctcc tggtctgttc tgtgagtggt ttctatccag gcagcattga agtcaggtgg       480
     ttccggaatg gccaggaaga gaagactggg gtggtgtcca cgggcctgat ccacaatgga       540
     gactggacct tccagaccct ggtgatgctg gaaacagttc ctcggagtgg agaggtttac       600
     acctgccaag tggagcaccc aagcgtgaca agccctctca cagtggaatg gannnnnnnn       660
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       720
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nngagcacgg tctgaatctg cacagagcaa       780
     gatgctgagt ggagtcgggg gctttgtgct gggcctgctc ttccttgggg ccgggctgtt       840
     catctacttc aggaatcaga aagnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       900
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       960
     nnngacactc tggacttcag ccaagagnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1020
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1080
     nnnnnnngat tcctgagctg a                                                1101
//