ID KF270569; SV 1; linear; genomic DNA; STD; HUM; 1101 BP.
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AC KF270569;
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DT 01-OCT-2013 (Rel. 118, Created)
DT 22-NOV-2013 (Rel. 118, Last updated, Version 2)
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DE Homo sapiens isolate D11026285 MHC class II antigen (HLA-DRB1) gene,
DE HLA-DRB1*09:01:10 allele, exons 2 through 6 and partial cds.
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KW .
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OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
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RN [1]
RP 1-1101
RA Li J., Qu J.H., Zhang C.F., Huang C.J., Tan J.W., Li Y.X., Tan Y.J., Ye K.,
RA Fang J.B., Yang X.Q., Zhou M.Z., Zeng H., Lan Z.H.;
RT "14 novel HLA-DRB1 alleles found by BGI in 2011 year";
RL Unpublished.
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RN [2]
RP 1-1101
RA Li J., Qu J.H., Zhang C.F., Huang C.J., Tan J.W., Li Y.X., Tan Y.J., Ye K.,
RA Fang J.B., Yang X.Q., Zhou M.Z., Zeng H., Lan Z.H.;
RT ;
RL Submitted (20-JUN-2013) to the INSDC.
RL Healthcare, BGI, Third Floor BGI, Second Building, Beishan Industrial Zone,
RL Beishan Beishan Road, Yantian District, Shenzhen, Guangdong 518083, China
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DR MD5; 40e2df63b9f33f5edb49a163c5a5a2e0.
DR IMGT/HLA; HLA-DRB1*09:01:10; HLA10173.
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CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1..1101
FT /organism="Homo sapiens"
FT /isolate="D11026285"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene <1..>1101
FT /gene="HLA-DRB1"
FT /allele="HLA-DRB1*09:01:10"
FT mRNA join(<1..270,371..652,753..863,964..987,1088..>1101)
FT /gene="HLA-DRB1"
FT /allele="HLA-DRB1*09:01:10"
FT /product="MHC class II antigen"
FT CDS join(<1..270,371..652,753..863,964..987,1088..1101)
FT /codon_start=3
FT /gene="HLA-DRB1"
FT /allele="HLA-DRB1*09:01:10"
FT /product="MHC class II antigen"
FT /note="antigen presentation protein"
FT /db_xref="GOA:U3PRP1"
FT /db_xref="InterPro:IPR000353"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR014745"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="UniProtKB/TrEMBL:U3PRP1"
FT /protein_id="AGW50702.1"
FT /translation="RFLKQDKFECHFFNGTERVRYLHRGIYNQEENVRFDSDVGEYRAV
FT TELGRPVAESWNSQKDFLERRRAEVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPL
FT QHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSG
FT EVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGH
FT SGLQPTGFLS"
FT exon 1..270
FT /gene="HLA-DRB1"
FT /allele="HLA-DRB1*09:01:10"
FT /number=2
FT gap 271..370
FT /estimated_length=unknown
FT exon 371..652
FT /gene="HLA-DRB1"
FT /allele="HLA-DRB1*09:01:10"
FT /number=3
FT gap 653..752
FT /estimated_length=unknown
FT exon 753..863
FT /gene="HLA-DRB1"
FT /allele="HLA-DRB1*09:01:10"
FT /number=4
FT gap 864..963
FT /estimated_length=unknown
FT exon 964..987
FT /gene="HLA-DRB1"
FT /allele="HLA-DRB1*09:01:10"
FT /number=5
FT gap 988..1087
FT /estimated_length=unknown
FT exon 1088..>1101
FT /gene="HLA-DRB1"
FT /allele="HLA-DRB1*09:01:10"
FT /number=6
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SQ Sequence 1101 BP; 156 A; 170 C; 233 G; 142 T; 400 other;
cacgtttctt gaagcaggat aagtttgagt gtcatttctt caacgggacg gagcgggtgc 60
ggtatctgca cagaggaatc tataaccaag aggagaacgt gcgcttcgac agcgacgtgg 120
gggagtaccg ggcggtgacg gagctggggc ggcctgtcgc cgagtcctgg aacagccaga 180
aggacttcct ggagcggagg cgggccgagg tggacaccgt gtgcagacac aactacgggg 240
ttggtgagag cttcacagtg cagaggcgag nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 300
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 360
nnnnnnnnnn tccatcctga ggtgactgtg tatcctgcca agactcagcc cctgcagcac 420
cacaacctcc tggtctgctc tgtgagtggt ttctatccag gcagcattga agtcaggtgg 480
ttccggaacg gccaggaaga gaaggctggg gtggtgtcca caggcctgat ccagaatgga 540
gactggacct tccagaccct ggtgatgctg gaaacagttc ctcggagtgg agaagtttac 600
acctgccaag tggagcaccc aagtgtgatg agccctctca cagtggaatg gannnnnnnn 660
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 720
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nngagcacgg tctgaatctg cacagagcaa 780
gatgctgagt ggagtcgggg gctttgtgct gggcctgctc ttccttgggg ccgggctgtt 840
catctacttc aggaatcaga aagnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 900
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 960
nnngacactc tggacttcag ccaacagnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1020
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1080
nnnnnnngat tcctgagctg a 1101
//