Dbfetch

Dbfetch

ID   KF270568; SV 1; linear; genomic DNA; STD; HUM; 1101 BP.
XX
AC   KF270568;
XX
DT   01-OCT-2013 (Rel. 118, Created)
DT   01-OCT-2013 (Rel. 118, Last updated, Version 1)
XX
DE   Homo sapiens isolate D11050140 MHC class II antigen (HLA-DRB1) gene,
DE   HLA-DRB1*08:15 variant allele, exons 2 through 6 and partial cds.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-1101
RA   Li J., Qu J.H., Zhang C.F., Huang C.J., Tan J.W., Li Y.X., Tan Y.J., Ye K.,
RA   Fang J.B., Yang X.Q., Zhou M.Z., Zeng H., Lan Z.H.;
RT   "14 novel HLA-DRB1 alleles found by BGI in 2011 year";
RL   Unpublished.
XX
RN   [2]
RP   1-1101
RA   Li J., Qu J.H., Zhang C.F., Huang C.J., Tan J.W., Li Y.X., Tan Y.J., Ye K.,
RA   Fang J.B., Yang X.Q., Zhou M.Z., Zeng H., Lan Z.H.;
RT   ;
RL   Submitted (20-JUN-2013) to the INSDC.
RL   Healthcare, BGI, Third Floor BGI, Second Building, Beishan Industrial Zone,
RL   Beishan Beishan Road, Yantian District, Shenzhen, Guangdong 518083, China
XX
DR   MD5; 5d332bbfff915f399a7318a3549f013f.
DR   IMGT/HLA; HLA-DRB1*08:63; HLA12580.
XX
CC   ##Assembly-Data-START##
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1101
FT                   /organism="Homo sapiens"
FT                   /isolate="D11050140"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gene            <1..>1101
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*08:15 variant"
FT   mRNA            join(<1..270,371..652,753..863,964..987,1088..>1101)
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*08:15 variant"
FT                   /product="MHC class II antigen"
FT   CDS             join(<1..270,371..652,753..863,964..987,1088..1101)
FT                   /codon_start=3
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*08:15 variant"
FT                   /product="MHC class II antigen"
FT                   /note="antigen presentation protein"
FT                   /db_xref="GOA:U3PQS9"
FT                   /db_xref="InterPro:IPR000353"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR014745"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="UniProtKB/TrEMBL:U3PQS9"
FT                   /protein_id="AGW50701.1"
FT                   /translation="RFLEYSTGECYFFNGTERVRFLDRYFYNQEEYVRFDSDVGEFRAV
FT                   TELGRPDEEYWNSQKDILEDRRALVDTYCRHNYGVGESFTVQRRVHPKVTVYPSKTQPL
FT                   QHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSG
FT                   EVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGH
FT                   SGLQPTGFLS"
FT   exon            1..270
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*08:15 variant"
FT                   /number=2
FT   gap             271..370
FT                   /estimated_length=unknown
FT   exon            371..652
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*08:15 variant"
FT                   /number=3
FT   gap             653..752
FT                   /estimated_length=unknown
FT   exon            753..863
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*08:15 variant"
FT                   /number=4
FT   gap             864..963
FT                   /estimated_length=unknown
FT   exon            964..987
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*08:15 variant"
FT                   /number=5
FT   gap             988..1087
FT                   /estimated_length=unknown
FT   exon            1088..>1101
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*08:15 variant"
FT                   /number=6
XX
SQ   Sequence 1101 BP; 156 A; 172 C; 225 G; 148 T; 400 other;
     cacgtttctt ggagtactct acgggtgagt gttatttctt caatgggacg gagcgggtgc        60
     ggttcctgga cagatacttc tataaccaag aggagtacgt gcgcttcgac agcgacgtgg       120
     gggagttccg ggcggtgacg gagctggggc ggcctgatga ggagtactgg aacagccaga       180
     aggacatcct ggaagacagg cgggccctgg tggacaccta ctgcagacac aactacgggg       240
     ttggtgagag cttcacagtg cagcggcgag nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       360
     nnnnnnnnnn tccatcctaa ggtgactgtg tatccttcaa agacccagcc cctgcagcac       420
     cacaacctcc tggtctgttc tgtgagtggt ttctatccag gcagcattga agtcaggtgg       480
     ttccggaatg gccaggaaga gaagactggg gtggtgtcca caggcctgat ccacaatgga       540
     gactggacct tccagaccct ggtgatgctg gaaacagttc ctcggagtgg agaggtttac       600
     acctgccaag tggagcaccc aagcgtgaca agccctctca cagtggaatg gannnnnnnn       660
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       720
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nngtgcacgg tctgaatctg cacagagcaa       780
     gatgctgagt ggagtcgggg gctttgtgct gggcctgctc ttccttgggg ccgggctgtt       840
     catctacttc aggaatcaga aagnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       900
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       960
     nnngacactc tggactccag ccaacagnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1020
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1080
     nnnnnnngat tcctgagctg a                                                1101
//