Dbfetch

Dbfetch

ID   KC818638; SV 1; linear; genomic DNA; STD; HUM; 1669 BP.
XX
AC   KC818638;
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DT   22-MAY-2013 (Rel. 116, Created)
DT   22-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE   Homo sapiens clone MDA0000110 MHC class I antigen (HLA-C) gene,
DE   HLA-C*07:17V allele, exons 2 through 4 and partial cds.
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KW   .
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RP   1-1669
RA   Zhao W., Moore B., Guerrero E., Smith N., Oyediran K., Cao K.;
RT   "Novel Sequences of HLA Allele C*07:17 Variant";
RL   Unpublished.
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RN   [2]
RP   1-1669
RA   Zhao W., Moore B., Guerrero E., Smith N., Oyediran K., Cao K.;
RT   ;
RL   Submitted (21-MAR-2013) to the INSDC.
RL   HLA Laboratory, Dept of Laboratory Medicine, UT MD Anderson Cancer Center,
RL   8515 Fannin Street, Houston, TX 77054, USA
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DR   MD5; 4a60c54835c9ede8ca8ecf40162cdae2.
DR   IMGT/HLA; HLA-C*07:307; HLA09451.
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: Assign v. 3.5.1.42
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..1669
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /clone="MDA0000110"
FT                   /db_xref="taxon:9606"
FT   gene            <1..>1669
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*07:17V"
FT   mRNA            join(<1..270,517..792,1394..>1669)
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*07:17V"
FT                   /product="MHC class I antigen"
FT   CDS             join(<1..270,517..792,1394..>1669)
FT                   /codon_start=3
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*07:17V"
FT                   /product="MHC class I antigen"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="InterPro:IPR037055"
FT                   /db_xref="UniProtKB/TrEMBL:R4RWU8"
FT                   /protein_id="AGL93365.1"
FT                   /translation="SHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPRGE
FT                   PRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTLQRMSGCDLGP
FT                   DGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGTC
FT                   VEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLTWQRDGED
FT                   QTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSW"
FT   exon            1..270
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*07:17V"
FT                   /number=2
FT   gap             271..516
FT                   /estimated_length=246
FT   exon            517..792
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*07:17V"
FT                   /number=3
FT   gap             793..1393
FT                   /estimated_length=601
FT   exon            1394..1669
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*07:17V"
FT                   /number=4
XX
SQ   Sequence 1669 BP; 169 A; 260 C; 286 G; 107 T; 847 other;
     gctcccactc catgaggtat ttcgacaccg ccgtgtcccg gcccggccgc ggagagcccc        60
     gcttcatctc agtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg       120
     cgagtccgag aggggagccg cgggcgccgt gggtggagca ggaggggccg gagtattggg       180
     accgggagac acagaagtac aagcgccagg cacaggctga ccgagtgagc ctgcggaacc       240
     tgcgcggcta ctacaaccag agcgaggacg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       360
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       420
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       480
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnggtc tcacaccctc cagaggatgt       540
     ctggctgcga cctggggccc gacgggcgcc tcctccgcgg gtatgaccag tccgcctacg       600
     acggcaagga ttacatcgcc ctgaacgagg acctgcgctc ctggaccgcc gcggacaccg       660
     cggctcagat cacccagcgc aagtgggagg cggcccgtga ggcggagcag cggagagcct       720
     acctggaggg cacgtgcgtg gagtggctcc gcagatacct ggagaacggg aaggagacgc       780
     tgcagcgcgc agnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       840
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       900
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       960
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1020
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1080
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1140
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1320
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1380
     nnnnnnnnnn nnnaaccccc aaagacacac gtgacccacc accccctctc tgaccatgag      1440
     gccaccctga ggtgctgggc cctgggcttc taccctgcgg agatcacact gacctggcag      1500
     cgggatgggg aggaccagac ccaggacacc gagcttgtgg agaccaggcc agcaggagat      1560
     ggaaccttcc agaagtgggc agctgtggtg gtgccttctg gacaagagca gagatacacg      1620
     tgccatatgc agcacgaggg gctgcaagag cccctcaccc tgagctggg                  1669
//