Dbfetch
ID K00971; SV 1; linear; genomic DNA; STD; MUS; 5567 BP. XX AC K00971; XX DT 02-JUL-1986 (Rel. 09, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 7) XX DE Mouse MHC class II H2-IE-alpha gene (haplotype d), complete cds. XX KW cell surface glycoprotein; class II gene; integral membrane protein; KW major histocompatibility complex. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-5567 RX DOI; 10.1093/nar/11.15.5055. RX PUBMED; 6308570. RA Hyldig-Nielsen J.J., Schenning L., Hammerling U., Widmark E., Heldin E., RA Lind P., Servenius B., Lund T., Flavell R., Lee J.S., Trowsdale J., RA Schreier P.H., Zablitzky F., Larhammar D.G., Peterson P.A., Rask L.; RT "The complete nucleotide sequence of the I-E alpha d immune response gene"; RL Nucleic Acids Res. 11(15):5055-5071(1983). XX DR MD5; a66ad7f8f9dd664d45128ab0f857d646. DR EuropePMC; PMC419864; 15169920. DR EuropePMC; PMC4966303; 27348586. DR EuropePMC; PMC5958787; 29844800. DR IMGT/LIGM; K00971. XX FH Key Location/Qualifiers FH FT source 1..5567 FT /organism="Mus musculus" FT /sub_species="domesticus" FT /strain="BALB/c" FT /mol_type="genomic DNA" FT /haplotype="d" FT /clone="CosI-d-alpha-1." FT /cell_line="X63-5-3-1" FT /tissue_type="myeloma" FT /db_xref="taxon:10090" FT exon 213..499 FT /gene="MHC H2-IE" FT /number=1 FT CDS join(418..499,2742..2987,3475..3756,4294..4451) FT /codon_start=1 FT /gene="MHC H2-IE" FT /product="alpha-antigen" FT /db_xref="GOA:P01904" FT /db_xref="InterPro:IPR001003" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="MGI:MGI:95900" FT /db_xref="PDB:1IEA" FT /db_xref="PDB:1IEB" FT /db_xref="PDB:1KT2" FT /db_xref="PDB:1KTD" FT /db_xref="UniProtKB/Swiss-Prot:P01904" FT /protein_id="AAA98624.1" FT /translation="MATIGALVLRFFFIAVLMSSQKSWAIKEEHTIIQAEFYLLPDKRG FT EFMFDFDGDEIFHVDIEKSETIWRLEEFAKFASFEAQGALANIAVDKANLDVMKERSNN FT TPDANVAPEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFL FT PRDDHLFRKFHYLTFLPSTDDFYDCEVDHWGLEEPLRKTWEFEEKTLLPETKENVMCAL FT GLFVGLVGIVVGIILIMKGIKKRNVVERRQGAL" FT sig_peptide 421..492 FT /gene="MHC H2-IE" FT mat_peptide join(493..499,2742..2987,3475..3756,4294..4448) FT /gene="MHC H2-IE" FT /product="alpha-antigen" FT intron 500..2741 FT /gene="MHC H2-IE" FT /number=1 FT exon 2742..2987 FT /gene="MHC H2-IE" FT /number=2 FT intron 2988..3474 FT /gene="MHC H2-IE" FT /number=2 FT exon 3475..3756 FT /gene="MHC H2-IE" FT /number=3 FT intron 3757..4293 FT /gene="MHC H2-IE" FT /number=3 FT exon 4294..4462 FT /gene="MHC H2-IE" FT /number=4 FT intron 4463..5088 FT /gene="MHC H2-IE" FT /note="I-E-alpha antigen intron D" FT exon 5089..>5567 FT /gene="MHC H2-IE" FT /number=5 XX SQ Sequence 5567 BP; 1484 A; 1219 C; 1297 G; 1567 T; 0 other; acctcacact cagaggtaca aatccccatt ttcatattag cgattttaat ttattctagc 60 ctcactgatg tgttcagata ggacttagat tgggacagaa gatgtgtatt ttacaaccaa 120 cattcccaat ctcttgaaat ttttgtcctg tttgtctaca gcctttatta tttttttgtt 180 aataagtgga aaaatttctt cttgaggaaa attatttctt gaaatgttaa gtggaaactc 240 ggatactaaa taggacctgg ttgcaaggaa ccctttccta gcaacagatg tgtcagtctg 300 aaacattttt ctgattggtt aaaagttgag tgctttggat tttaatccct tttagttctt 360 gttaattctg cctcagtctg cgatcgcttc tgaacccacc aaacacccaa gaagaaaatg 420 gccacaattg gagccctggt gttaagattt ttcttcattg ctgttctgat gagctcccag 480 aagtcatggg ctatcaaagg taagtgctaa gaaaaccaaa accaaggtgg tagactgtat 540 gaggctttgg agaaatgaac atgggcatag aaagggcagt ctttgaactg aaaaaataag 600 aatggcagac accatgtaag tctaaatctg aaggttatca ggcagttata gttcaggggg 660 aaaaatcttt ctactgaagt aaaatgactc agacttagtt gagcaaacaa ataaaggcac 720 atgttgctga gagctgctgt ctctccagag gtcagacatt tggggctatg ggaaagtagc 780 tttcagtagg caccaaccag tttcatccct gggttttatt tttttttctt tctggaacat 840 tgggaaaatt aataattgga aacctcacgc tattttgtgg agaccaagtg agctaatgta 900 tgagaggctc tcagtgctgt tctcgtctga gaatcctgtt cacaccagtc ctgttgtatt 960 taaacatgga caccatattt aagatcacga gaaagaaagg acatcatccc actccaaatc 1020 tacccaagag gtagggcagg cacactgata tgaagtgcac ttagttgact gattcttggg 1080 gcagttgtag ctgtgccagc cccttcctgt gacacagcag atgctacaag aactgtggtc 1140 accactaccg agttctagtt accagagagc agagagacgt aagtggaggt tggaatcatc 1200 tccagagcaa atattttgtg ctgatgtgag aaagggttct gcatccggag catccctgtc 1260 gacaaccaag gaaggaagac aagcagaaag gaaatgagaa gagtagggaa gccagctcca 1320 gtcacacaag agcaagtctg ggcttctact gcccaagaag gtcttagcga ggcagatgct 1380 cttcctgtgc agcagagcca gaggaagaag gaatatagaa gatacgtttg tgcataaaga 1440 caatcaataa aataaatccc tttgactaaa cattaaaatc ggtcacctta tcctaaagac 1500 aacacagaag ccctcatctc atcgtccttg ttgttggtta tcctccctgt caatcataac 1560 agaccatgtc ccacaaaagt agtcctagtc gaagtagtgg ttagataaag gtctagtttc 1620 aaggtcaacc cagctatgcc ccttctcaaa gacgtagtct gggacgagga taagcgatcc 1680 agagcattgc aaggtctcag tgtcaatctc aggtgccttg ggcacactgt atgtctctaa 1740 gggctactgg ttaaaggaat ttgtaaccaa aaattgtcag cagagtttgt taggtttggt 1800 gagggtactg caagttcttg tctcaaacct atcctgatag aatgggactc agcagaggta 1860 tgacaggaaa ctcccttatt aagtagacag tagtgatatg ctcagttaac agggtgagtg 1920 tcacaattgt aatcagttcc caagttccca aaggatcctt tcaaataaca cttctctact 1980 cggagagtac agtgctagga taaaaagaag cccctgtgtg ctgacccaag ctatttaatc 2040 cctgcacaac agggaacaag ggatgctttt ttctgatgca ctgtagccaa atttcaaaag 2100 tcatgaagtc attaaatacc cactcaaata tgttttctga atcaacctgc cactccaagg 2160 ccaaagggac agtgtaggag agggaacaga aagaacatgt gagccagagg atgggggtgg 2220 ggggacgacg ccatgagaga tactgtcttc cagacatgac atgacattgc acacatgact 2280 gaacttgcag tggctgcaga tatatgcaca agaccttccc aggccggcta aacgatgtag 2340 catggatggg gaaggagctc ttgagagact gtttacagtt gaaggttgct gatggagagt 2400 atgtgtttca gggggtggcc actggttggt ggctcatgct ggagtgcaca tatggacaac 2460 agttgacttg gtgctaataa agaaggctat gttgaaggct gtgtcttgca gccccatcca 2520 ttcatgttct aacacaaaca gctcccttct ttctcacctg cctgctttac tcagtatgaa 2580 tgtccatcac ccagacactg tttcttccct aactcccatt ctatgctctt ccatcccgat 2640 tgtcccagtc accgtccatc cccgcccacc caaatgcctg tgggttcttc atcatcatct 2700 tcttccatct ccctccctaa tcccctttcc tttcttttca gaggaacaca ccatcatcca 2760 ggcggagttc tatcttttac cagacaaacg tggagagttt atgtttgact ttgacggcga 2820 tgagattttc catgtagaca ttgaaaagtc agagaccatc tggagacttg aagaatttgc 2880 aaagtttgcc agctttgagg ctcagggtgc actggctaat atagctgtgg acaaagctaa 2940 cctggatgtc atgaaagagc gttccaacaa cactccagat gccaacggta cctgcctctc 3000 ctccctatcc cctcctccca gatgtgggaa cgcagctgta aatagatact ttggcgaatt 3060 ctataagggt gtaaggaggt cttgcttgcc cttctaagac ctaagtttgc tcagcacagc 3120 aaatctaatt ctcaggccac aggcccaggg attttagaag tttgttcctt tttttttttt 3180 tttttttttt tttgtagtct tggtttattc atcaattaac atttatgaaa gcactgactt 3240 gagtctatac agtgggagtg agaaactggg atgggggctt gggtggaatc gcgtgagtgg 3300 ttggatacct catacctcaa tactggctcc aaaatgtcag atctgggact agggtcacat 3360 gactgactcc tcagggagcc gtttcagagt cctaggtagc attgtaccac aggacagcat 3420 gggcagagca gaagctgaag gaatgaaagc taatttatgc catgtccccc acagtggccc 3480 cagaggtgac tgtactctcc agaagccctg tgaacctggg agagcccaac atcctcatct 3540 gtttcattga caagttctcc cctccagtgg tcaatgtcac ctggctccgg aatggacggc 3600 ctgtcaccga aggcgtgtca gagacagtgt ttctcccgag ggacgatcac ctcttccgca 3660 aattccacta tctgaccttc ctgccctcca cagatgattt ctatgactgt gaggtggatc 3720 actggggctt ggaggagcct ctgcggaaga cctggggtag ggtgcagtca tgacttcact 3780 tgcaggctcc cagactgctt caatgctgta ttctggacac gtagcattta acagtacagg 3840 gatgggagca cagctcactg ttagagtaat ggccgtatag gtgtggggct tcaagctcaa 3900 ttaccagcat cacaaactaa gagttcacag tgtttcgtaa cattgactac aatatataca 3960 ccttggttat cttgtaaggc acattcattc atttttgtaa agctattatg catgtgggtg 4020 ttttgccagt gtgtatgact atgcaccatg taagtgcctg gtgccctcag aggtcagaac 4080 aaggtgtcct atcccctgca cctggagctg tgtgcagttg tcagctgcca tatggatact 4140 ggaaatgaaa cctaggttct ctgcaagagc agccagtgtt cttaacgaat gagttgtccc 4200 tccagtccta ggacacactc tctttcttat attggctacc catgttattt cctacaacat 4260 caactgacat ctcctctgct ttattttccc cagagtttga agagaaaacc ctcctcccag 4320 aaactaaaga gaatgtcatg tgtgctcttg ggttgtttgt gggtctggtg ggcatcgttg 4380 tggggattat cctcatcatg aagggtatta aaaaacgcaa tgttgtagaa cgccgacaag 4440 gagccctgtg agatacctgg aggtgcgtta aatgtgctca gagactgaca gatgtgtgaa 4500 tgtctgaggg aggaaagcac gagtgtggtg cctttaagag aagggtaggg gtagtggtgt 4560 ctcttaattc cttttgttgg aaaagttgag ctttgagttc agatgcttcc caaaccttca 4620 ggatctgtga tcccttccta gggtgttcct ggaccagttg tgagtcttgg aaattttctt 4680 cagttcccaa gactgtcgac tcacacgaga acactgtatc cttgtggcat gggaaagtta 4740 gtctcaaggc tcaggcatgc agagcttctg ggtcttaagg catcagccac agctccagag 4800 tctgaagcct ttggagttaa gctcttggat ctgtggcatg aactgggaat ctcctgagtc 4860 catcactagt attgatcctt tagtctgaaa gatgcttcta aagggatctg gaagaggcaa 4920 tgcatgttga tcttcaggca aaataaggtt tggggctcat gttgggaact caaatcaaca 4980 tttaaggact ttttcagagt cacttgacca agagggacca ggcagggaga tgaagggctc 5040 tcagttctta ctgtgacctc cttgataatt ttgtgtgtcc caccacaggc aatgccttca 5100 gttaaagttc agtgaagaaa cttgctgtga cagcgtctga ggctacccct ttcagttgtt 5160 catctcagcg gagacctcat cttcttcagt ttccagcatt aagcctcaag aatggcagca 5220 ggttctctga tctaatgtct ggctggggtt ctccatctcc cacctgtatc tatattctat 5280 cttccaccat ttataataat tcctctgtga caaatatcac aaagttcttc ctccgctgtg 5340 gaactttctg agaatggagt caatctttct ccaaactgtg ttcttttttt tttacaaata 5400 ataaacacct tgggttgtga cgtggttttt gtgcctgagc cagttcttgg tggagaggag 5460 ggccctgagg agtatgtgta cttcccctat gtctgaatac tgagtaccct ttacaaagtc 5520 tgggattaat cagaaatcca gcctcactag ggttttaagc ttctgca 5567 //