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EBI Dbfetch

ID   JX423802; SV 1; linear; genomic DNA; STD; HUM; 787 BP.
XX
AC   JX423802;
XX
DT   03-OCT-2012 (Rel. 114, Created)
DT   03-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Homo sapiens MHC class I antigen (HLA-A) gene, HLA-A*02:05:01 variant
DE   allele, exons 2, 3 and partial cds.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-787
RA   Lazaro A.M., Hurley C.K.;
RT   "Novel HLA class I allele sequence";
RL   Unpublished.
XX
RN   [2]
RP   1-787
RA   Lazaro A.M., Hurley C.K.;
RT   ;
RL   Submitted (25-JUL-2012) to the INSDC.
RL   Oncology, Georgetown University, 3970 Reservoir Rd, N.W., Washington, DC
RL   20057, USA
XX
DR   IMGT/HLA; A*02:05:06; HLA08561.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..787
FT                   /organism="Homo sapiens"
FT                   /isolate="BY00931"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gene            <1..>787
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*02:05:01 variant"
FT   mRNA            join(<1..269,511..>787)
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*02:05:01 variant"
FT                   /product="MHC class I antigen"
FT   CDS             join(<1..269,511..>787)
FT                   /codon_start=3
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*02:05:01 variant"
FT                   /product="MHC class I antigen"
FT                   /db_xref="GOA:K0D9I4"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR027648"
FT                   /db_xref="UniProtKB/TrEMBL:K0D9I4"
FT                   /protein_id="AFT82614.1"
FT                   /translation="SHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASRRME
FT                   PRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTLQRMYGCDVGS
FT                   DWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQWRAYLEGTC
FT                   VEWLRRYLENGKETLQRT"
FT   exon            1..269
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*02:05:01 variant"
FT                   /number=2
FT   gap             270..510
FT                   /estimated_length=241
FT   exon            511..787
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*02:05:01 variant"
FT                   /number=3
XX
SQ   Sequence 787 BP; 110 A; 161 C; 196 G; 79 T; 241 other;
     gctctcactc catgaggtat ttctacacct ctgtgtcccg gcccggccgc ggggagcccc        60
     gcttcatcgc agtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg       120
     cgagccggag gatggagccg cgggcgccgt ggatagagca ggagggtccg gagtattggg       180
     acggggagac acggaaagtg aaggcccact cacagactca ccgagtggac ctggggaccc       240
     tgcgcggcta ctacaaccag agcgaggccn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       360
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       420
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       480
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ggttctcaca ccctccagag gatgtatggc       540
     tgcgacgtgg ggtcggactg gcgcttcctg cgcgggtacc accagtacgc ctacgacggc       600
     aaggattaca tcgccctgaa agaggacctg cgctcttgga ccgcggcgga catggcagct       660
     cagaccacca agcacaagtg ggaggcggcc catgtggcgg agcagtggag agcctacctg       720
     gagggcacgt gcgtggagtg gctccgcaga tacctggaga acgggaagga gacgctgcag       780
     cgcacgg                                                                 787
//


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