Dbfetch
ID JX282181; SV 1; linear; genomic DNA; STD; HUM; 1482 BP.
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AC JX282181;
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DT 24-SEP-2012 (Rel. 114, Created)
DT 30-JUN-2013 (Rel. 117, Last updated, Version 2)
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DE Homo sapiens isolate M0138 MICB antigen gene, partial cds.
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KW .
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OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
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RN [1]
RP 1-1482
RX DOI; 10.1007/s00251-013-0699-4.
RX PUBMED; 23549730.
RA Ying Y., He Y., Tao S., Han Z., Wang W., Chen N., He J., Zhang W., He J.,
RA Zhu F., Lv H.;
RT "Distribution of MICB diversity in the Zhejiang Han population: PCR
RT sequence-based typing for exons 2-6 and identification of five novel MICB
RT alleles";
RL Immunogenetics 65(7):485-492(2013).
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RN [2]
RP 1-1482
RA Zhu F.M., Ying Y.L., He Y.M.;
RT ;
RL Submitted (07-JUL-2012) to the INSDC.
RL HLA Laboratory, Transfusion Institute, Blood Center of Zhejiang Province,
RL Wulin Road 345, Hangzhou, Zhejiang 310006, China
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DR MD5; 1d73fd06c2bc65262ac51544abec70c4.
DR IMGT/HLA; MICB*005:07; HLA08420.
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FH Key Location/Qualifiers
FH
FT source 1..1482
FT /organism="Homo sapiens"
FT /isolate="M0138"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT mRNA join(<1..255,356..643,744..1022,1123..1254,1355..>1482)
FT /product="MICB antigen"
FT CDS join(<1..255,356..643,744..1022,1123..1254,1355..1482)
FT /codon_start=3
FT /product="MICB antigen"
FT /note="activating NKG2D receptor"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:Q0EFB4"
FT /protein_id="AFR77728.1"
FT /translation="PHSLRYNLMVLSQDGSVQSGFLAEGHLDGQPFLRYDRQKRRAKPQ
FT GQWAEDVLGAKTWDTETEDLTENGQDLRRTLTHIKDQKGGLHSLQEIRVCEIHEDSSTR
FT GSRHFYYDGELFLSQNLETQESTVPQSSRAQTLAMNVTNFWKEDAMKTKTHYRAMQADC
FT LQKLQRYLKSGVAIRRTVPPMVNVTCSEVSEGNITVTCRASSFYPRNITLTWRQDGVSL
FT SHNTQQWGDVLPDGNGTYQTWVATRIRQGEEQRFTCYMEHSGNHGTHPVPSGKALVLQS
FT QRTDFPYVSAAMPCFVIIIILCVPCCKKKTSAAEGPELVSLQVLDQHPVGTGDHRDAAQ
FT LGFQPLMSATGSTGSTEGA"
FT variation 131
FT /replace="g"
FT gap 256..355
FT /estimated_length=unknown
FT gap 644..743
FT /estimated_length=unknown
FT gap 1023..1122
FT /estimated_length=unknown
FT gap 1255..1354
FT /estimated_length=unknown
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SQ Sequence 1482 BP; 270 A; 290 C; 305 G; 217 T; 400 other;
agccccacag tcttcgttac aacctcatgg tgctgtccca ggatggatct gtgcagtcag 60
ggtttctcgc tgagggacat ctggatggtc agcccttcct gcgctatgac aggcagaaac 120
gcagggcaaa accccaggga cagtgggcag aagatgtcct gggagctaag acctgggaca 180
cagagaccga ggacttgaca gagaatgggc aagacctcag gaggaccctg actcatatca 240
aggaccagaa aggagnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 300
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnngcttg 360
cattccctcc aggagattag ggtctgtgag atccatgaag acagcagcac caggggctcc 420
cggcatttct actacgatgg ggagctcttc ctctcccaaa acctggagac tcaagaatcg 480
acagtgcccc agtcctccag agctcagacc ttggctatga acgtcacaaa tttctggaag 540
gaagatgcca tgaagaccaa gacacactat cgcgctatgc aggcagactg cctgcagaaa 600
ctacagcgat atctgaaatc cggggtggcc atcaggagaa cagnnnnnnn nnnnnnnnnn 660
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 720
nnnnnnnnnn nnnnnnnnnn nnntgccccc catggtgaat gtcacctgca gcgaggtctc 780
agagggcaac atcaccgtga catgcagggc ttccagcttc tatccccgga atatcacact 840
gacctggcgt caggatgggg tatctttgag ccacaacacc cagcagtggg gggatgtcct 900
gcctgatggg aatggaacct accagacctg ggtggccacc aggattcgcc aaggagagga 960
gcagaggttc acctgctaca tggaacacag cgggaatcac ggcactcacc ctgtgccctc 1020
tgnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1080
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnggaaggcg ctggtgcttc 1140
agagtcaacg gacagacttt ccatatgttt ctgctgctat gccatgtttt gttattatta 1200
ttattctctg tgtcccttgt tgcaagaaga aaacatcagc ggcagagggt ccagnnnnnn 1260
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1320
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnagcttg tgagcctgca ggtcctggat 1380
caacacccag ttgggacagg agaccacagg gatgcagcac agctgggatt tcagcctctg 1440
atgtcagcta ctgggtccac tggttccact gagggcgcct ag 1482
//