Dbfetch
ID JQ952567; SV 1; linear; genomic DNA; STD; HUM; 1022 BP. XX AC JQ952567; XX DT 26-JUN-2012 (Rel. 113, Created) DT 27-JUN-2013 (Rel. 117, Last updated, Version 2) XX DE Homo sapiens MHC class I antigen (HLA-B) gene, HLA-B*50 variant allele, DE exons 2 through 4 and partial cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-1022 RX DOI; 10.1111/tan.12084. RX PUBMED; 23646955. RA Azzarone R., Canossi A., Cervelli C., Scimitarra M., Papola F.; RT "Identification of the novel HLA-B*50:18 allele variant in an Italian RT unrelated bone marrow donor"; RL Tissue Antigens 81(6):466-468(2013). XX RN [2] RP 1-1022 RA Azzarone R., Canossi A., Cervelli C., Scimitarra M., Battistoni C., RA Di Iulio B., Fracassi D., Scarnecchia M.A., Papola F.; RT "Identification of a novel HLA-B*50 allele variant in a DNA sample from an RT Italian unrelated bone marrow donor"; RL Unpublished. XX RN [3] RP 1-1022 RA Azzarone R., Canossi A., Cervelli C., Scimitarra M., Battistoni C., RA Di Iulio B., Fracassi D., Scarnecchia M.A., Papola F.; RT ; RL Submitted (18-APR-2012) to the INSDC. RL San Salvatore Hospital, Regional Center of Immunohaematology and Tissue RL Typing ASL n.1, Institute C.N.R.-IFT, Via L. Natali, L'Aquila 67100, Italy XX DR MD5; 2072f93407c779ae3f8254bb38845e69. DR IMGT/HLA; HLA-B*50:18; HLA08559. XX FH Key Location/Qualifiers FH FT source 1..1022 FT /organism="Homo sapiens" FT /chromosome="6" FT /map="6p21.3" FT /isolate="12000216" FT /mol_type="genomic DNA" FT /country="Italy" FT /isolation_source="unrelated bone marrow transplantation" FT /tissue_type="blood" FT /db_xref="taxon:9606" FT gene <1..>1022 FT /gene="HLA-B" FT /allele="HLA-B*50 variant" FT /note="similar to B*50:01:01" FT mRNA join(<1..270,371..646,747..>1022) FT /gene="HLA-B" FT /allele="HLA-B*50 variant" FT /product="MHC class I antigen" FT CDS join(<1..270,371..646,747..>1022) FT /codon_start=3 FT /gene="HLA-B" FT /allele="HLA-B*50 variant" FT /product="MHC class I antigen" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:I6TKJ3" FT /protein_id="AFM74034.1" FT /translation="SHSMRYFHTAMSRPGRGEPRFITVGYVDDTLFVRFDSDATSPRKE FT PRAPWIEQEGPEYWDRETQISKTNTQTYRESLRNLRGYYNQSEAGSHTWQRMYGCDLGP FT DGRLLRGYNQLAYDGKDYIALNQDLSSWTAADTAAQITQRKWEAAREAEQLRAYLEGLC FT VEWLRRYLENGKETLQRADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGED FT QTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW" FT exon 1..270 FT /gene="HLA-B" FT /allele="HLA-B*50 variant" FT /number=2 FT gap 271..370 FT /estimated_length=unknown FT exon 371..646 FT /gene="HLA-B" FT /allele="HLA-B*50 variant" FT /number=3 FT variation 481 FT /gene="HLA-B" FT /replace="g" FT /note="compared to HLA-B*50:01:01 allele" FT gap 647..746 FT /estimated_length=unknown FT exon 747..1022 FT /gene="HLA-B" FT /allele="HLA-B*50 variant" FT /number=4 XX SQ Sequence 1022 BP; 182 A; 254 C; 271 G; 115 T; 200 other; gctcccactc catgaggtat ttccacaccg ccatgtcccg gcccggccgc ggggagcccc 60 gcttcatcac cgtgggctac gtggacgaca cgctgttcgt gaggttcgac agcgacgcca 120 cgagtccgag gaaggagccg cgggcgccat ggatagagca ggaggggccg gagtattggg 180 accgggagac acagatctcc aagaccaaca cacagactta ccgagagagc ctgcggaacc 240 tgcgcggcta ctacaaccag agcgaggccg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 300 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 360 nnnnnnnnnn ggtctcacac ttggcagagg atgtatggct gcgacctggg gcccgacggg 420 cgcctcctcc gcgggtataa ccagttagcc tacgacggca aggattacat cgccctgaac 480 caggacctga gctcctggac cgcggcggac accgcggctc agatcaccca gcgcaagtgg 540 gaggcggccc gtgaggcgga gcagctgaga gcctacctgg agggcctgtg cgtggagtgg 600 ctccgcagat acctggagaa cgggaaggag acgctgcagc gcgcggnnnn nnnnnnnnnn 660 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 720 nnnnnnnnnn nnnnnnnnnn nnnnnnaccc cccaaagaca catgtgaccc accaccccat 780 ctctgaccat gaggccaccc tgaggtgctg ggccctgggc ttctaccctg cggagatcac 840 actgacctgg cagcgggatg gcgaggacca aactcaggac accgagcttg tggagaccag 900 accagcagga gatagaacct tccagaagtg ggcagctgtg gtggtgcctt ctggagaaga 960 gcagagatac acatgccatg tacagcatga ggggctgccg aagcccctca ccctgagatg 1020 gg 1022 //