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EBI Dbfetch

ID   JQ815888; SV 1; linear; genomic DNA; STD; HUM; 1663 BP.
XX
AC   JQ815888;
XX
DT   18-JUN-2012 (Rel. 113, Created)
DT   18-JUN-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Homo sapiens MHC class I antigen (HLA-A) gene, HLA-A*29 variant allele,
DE   exons 2 through 4 and partial cds.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-1663
RA   Lozano-Ramos I., Gil J., Campos E., Ambros C., Caro P., Mantecon S.,
RA   Mongay L., Herrero M.J., Correa P., Colobran R., Palou E.;
RT   "Identification of a new HLA-A allele";
RL   Unpublished.
XX
RN   [2]
RP   1-1663
RA   Lozano-Ramos I., Gil J., Campos E., Ambros C., Caro P., Mantecon S.,
RA   Mongay L., Herrero M.J., Correa P., Colobran R., Palou E.;
RT   ;
RL   Submitted (23-MAR-2012) to the INSDC.
RL   LIRAD, Banc de Sang i Teixits, Pg Taulat, 116, Barcelona 08005, Spain
XX
DR   MD5; b18557c11354999412511b6638ce109b.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1663
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gene            <1..>1663
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*29 variant"
FT   mRNA            join(<1..270,512..787,1388..>1663)
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*29 variant"
FT                   /product="MHC class I antigen"
FT   CDS             join(<1..270,512..787,1388..>1663)
FT                   /codon_start=3
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*29 variant"
FT                   /product="MHC class I antigen"
FT                   /db_xref="GOA:I6QLC3"
FT                   /db_xref="IMGT/HLA:A*29:38"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR027648"
FT                   /db_xref="UniProtKB/TrEMBL:I6QLC3"
FT                   /protein_id="AFM35650.1"
FT                   /translation="SHSMRYFTTSVSRPGRGEPRFIAVGYVDDTQFVRFDSGAASQRME
FT                   PRAPWIEQEGPEYWDLQTRNVKAQSQTDRANLGTLRGYYNQSEAGSHTIQMMYGCDVGS
FT                   DGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWEAARVAEQLRAYLEGTC
FT                   VEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGED
FT                   QTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRW"
FT   exon            1..270
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*29 variant"
FT                   /number=2
FT   gap             271..511
FT                   /estimated_length=241
FT   exon            512..787
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*29 variant"
FT                   /number=3
FT   gap             788..1387
FT                   /estimated_length=600
FT   exon            1388..>1663
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*29 variant"
FT                   /number=4
XX
SQ   Sequence 1663 BP; 164 A; 246 C; 287 G; 125 T; 841 other;
     gctcccactc catgaggtat ttcaccacat ccgtgtcccg gcccggccgc ggggagcccc        60
     gcttcatcgc cgtgggctac gtggacgaca cgcagttcgt gcggtttgac agcggcgccg       120
     cgagccagag gatggagccg cgggcaccgt ggatagagca ggaggggccg gagtattggg       180
     acctgcagac acggaatgtg aaggcccagt cacagactga ccgagcgaac ctggggaccc       240
     tgcgcggcta ctacaaccag agcgaggccg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       360
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       420
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       480
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ngttctcaca ccatccagat gatgtatggc       540
     tgcgacgtgg ggtcggacgg gcgcttcctc cgcgggtacc ggcaggacgc ctacgacggc       600
     aaggattaca tcgccttgaa cgaggacctg cgctcttgga ccgcggcgga catggcggct       660
     cagatcaccc agcgcaagtg ggaggcggcc cgtgtggcgg agcagttgag agcctacctg       720
     gagggcacgt gcgtggagtg gctccgcaga tacctggaga acgggaagga gacgctgcag       780
     cgcacggnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       840
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       900
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       960
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1020
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1080
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1140
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1320
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1380
     nnnnnnnacg cccccaagac gcatatgact caccacgctg tctctgacca tgaggccacc      1440
     ctgaggtgct gggccctgag cttctaccct gcggagatca cactgacctg gcagcgggat      1500
     ggggaggacc agacccagga cacggagctt gtggagacca ggcctgcagg ggatggaacc      1560
     ttccagaagt gggcgtctgt ggtggtgcct tctggacagg agcagagata cacctgccat      1620
     gtgcagcatg agggtctgcc caagcccctc accctgagat ggg                        1663
//


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