Dbfetch
ID J00204; SV 1; linear; genomic DNA; STD; HUM; 3742 BP. XX AC J00204; XX DT 13-JUN-1985 (Rel. 06, Created) DT 17-JUN-2008 (Rel. 96, Last updated, Version 9) XX DE Human HLA-DR alpha-chain (chain-p34) gene, exons 2, 3, 4 and 5. XX KW antigen; B-cell histocompatibility gene structure; class II antigen; KW histocompatibility antigen; immunoglobulin-like sequence. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3742 RX DOI; 10.1073/pnas.80.12.3543. RX PUBMED; 6304715. RA Das H.K., Lawrance S.K., Weissman S.M.; RT "Structure and nucleotide sequence of the heavy chain gene of HLA-DR"; RL Proc. Natl. Acad. Sci. U.S.A. 80(12):3543-3547(1983). XX RN [2] RP 1-3742 RA Das H.K., Lawrance S.K., Weissman S.M.; RT "Structure and nucleotide sequence of the heavy chain gene of HLA-DR"; RL Proc. Natl. Acad. Sci. U.S.A. 80:7024-7024(1983). XX DR MD5; cb6b22bfd04b6e5ed42c9e169d3ad62d. DR Ensembl-Gn; ENSG00000204287; homo_sapiens. DR Ensembl-Gn; ENSG00000206308; homo_sapiens. DR Ensembl-Gn; ENSG00000226260; homo_sapiens. DR Ensembl-Gn; ENSG00000227993; homo_sapiens. DR Ensembl-Gn; ENSG00000228987; homo_sapiens. DR Ensembl-Gn; ENSG00000230726; homo_sapiens. DR Ensembl-Gn; ENSG00000234794; homo_sapiens. DR Ensembl-Tr; ENST00000383127; homo_sapiens. DR Ensembl-Tr; ENST00000383259; homo_sapiens. DR Ensembl-Tr; ENST00000395388; homo_sapiens. DR Ensembl-Tr; ENST00000411524; homo_sapiens. DR Ensembl-Tr; ENST00000414698; homo_sapiens. DR Ensembl-Tr; ENST00000416883; homo_sapiens. DR Ensembl-Tr; ENST00000442960; homo_sapiens. DR EuropePMC; PMC306920; 7784170. DR IMGT/LIGM; J00204. XX CC [2] corrects [1]. CC Sequence shown is from [2], which corrects [1]. CC revision 254 403 insertion not present in [1]. XX FH Key Location/Qualifiers FH FT source 1..3742 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT intron <1..1070 FT /number=1 FT /note="HLA-DR alpha-chain" FT CDS join(J00203.1:1215..1296,1071..1316,1808..2089,2378..2532) FT /codon_start=1 FT /note="HLA-DR alpha-chain" FT /db_xref="GOA:P01903" FT /db_xref="HGNC:HGNC:4947" FT /db_xref="IMGT/HLA:DRA*01:01:01:01" FT /db_xref="InterPro:IPR001003" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR032431" FT /db_xref="PDB:1A6A" FT /db_xref="PDB:1AQD" FT /db_xref="PDB:1BX2" FT /db_xref="PDB:1D5M" FT /db_xref="PDB:1D5X" FT /db_xref="PDB:1D5Z" FT /db_xref="PDB:1D6E" FT /db_xref="PDB:1DLH" FT /db_xref="PDB:1FV1" FT /db_xref="PDB:1FYT" FT /db_xref="PDB:1H15" FT /db_xref="PDB:1HQR" FT /db_xref="PDB:1HXY" FT /db_xref="PDB:1J8H" FT /db_xref="PDB:1JWM" FT /db_xref="PDB:1JWS" FT /db_xref="PDB:1JWU" FT /db_xref="PDB:1KG0" FT /db_xref="PDB:1KLG" FT /db_xref="PDB:1KLU" FT /db_xref="PDB:1LO5" FT /db_xref="PDB:1PYW" FT /db_xref="PDB:1R5I" FT /db_xref="PDB:1SEB" FT /db_xref="PDB:1SJE" FT /db_xref="PDB:1SJH" FT /db_xref="PDB:1T5W" FT /db_xref="PDB:1T5X" FT /db_xref="PDB:1YMM" FT /db_xref="PDB:1ZGL" FT /db_xref="PDB:2FSE" FT /db_xref="PDB:2G9H" FT /db_xref="PDB:2IAM" FT /db_xref="PDB:2IAN" FT /db_xref="PDB:2ICW" FT /db_xref="PDB:2IPK" FT /db_xref="PDB:2OJE" FT /db_xref="PDB:2Q6W" FT /db_xref="PDB:2SEB" FT /db_xref="PDB:2WBJ" FT /db_xref="PDB:2XN9" FT /db_xref="PDB:3C5J" FT /db_xref="PDB:3L6F" FT /db_xref="PDB:3O6F" FT /db_xref="PDB:3PDO" FT /db_xref="PDB:3PGC" FT /db_xref="PDB:3PGD" FT /db_xref="PDB:3QXA" FT /db_xref="PDB:3QXD" FT /db_xref="PDB:3S4S" FT /db_xref="PDB:3S5L" FT /db_xref="PDB:3T0E" FT /db_xref="PDB:4AEN" FT /db_xref="PDB:4AH2" FT /db_xref="PDB:4C56" FT /db_xref="PDB:4E41" FT /db_xref="PDB:4FQX" FT /db_xref="PDB:4GBX" FT /db_xref="PDB:4H1L" FT /db_xref="PDB:4H25" FT /db_xref="PDB:4H26" FT /db_xref="PDB:4I5B" FT /db_xref="PDB:4IS6" FT /db_xref="PDB:4MCY" FT /db_xref="PDB:4MCZ" FT /db_xref="PDB:4MD0" FT /db_xref="PDB:4MD4" FT /db_xref="PDB:4MD5" FT /db_xref="PDB:4MDI" FT /db_xref="PDB:4MDJ" FT /db_xref="PDB:4OV5" FT /db_xref="PDB:4X5W" FT /db_xref="PDB:4X5X" FT /db_xref="PDB:4Y19" FT /db_xref="PDB:4Y1A" FT /db_xref="UniProtKB/Swiss-Prot:P01903" FT /protein_id="AAA36302.1" FT /translation="MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQAEFYLNPDQSG FT EFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNY FT TPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFL FT PREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCAL FT GLTVGLVGIIIGTIFIIKGVRKSNAAERRGPL" FT mat_peptide join(J00203.1:1290..1296,1071..1316,1808..2089,2378..2529) FT /note="HLA-DR alpha-chain" FT exon 1071..1316 FT /number=2 FT /note="HLA-DR alpha-chain" FT intron 1317..1807 FT /number=2 FT /note="HLA-DR alpha-chain" FT exon 1808..2089 FT /number=3 FT /note="HLA-DR alpha-chain" FT intron 2090..2377 FT /number=3 FT /note="HLA-DR alpha-chain" FT exon 2378..2543 FT /number=4 FT /note="HLA-DR alpha-chain" FT intron 2544..3281 FT /number=4 FT exon 3282..>3282 FT /number=5 XX SQ Sequence 3742 BP; 1002 A; 842 C; 758 G; 1140 T; 0 other; gtctcaaaca accaaaccaa aacaaaacaa aatatctcac cttatctttg aagactaagg 60 aaaaaaaaaa tctcccactc atcgatacac tccacagagg cagcatactc tcccagcgca 120 gctttctctt ttcatgttca ttattccctt ggtgttggtt attctcaatg tcaatcgtaa 180 cagaacatct tccataataa cagtcccaat ttaaggagca ttaagataaa aggtggaatt 240 gccaaggtca atccagacga gaaccttctc atagaggtaa ccaccgtgtg ggtttggatg 300 ctgggaagca gggggactat gacgctacaa ggtctcagtc ttaatttttg gagtacttca 360 gtccccaggt atattttcca tagatttggc ccttaaataa aaagaagctt ctgactctaa 420 aatgtaaaca gtgcttgtta ttactcacct tatctcattt aatcttaaaa acaaacccct 480 gacaggatca aaaccacagc aggactacat aataggaaaa ctatacataa ataggtagaa 540 taatctgctc aggatcacta ggtaagttgc tgaataagaa ttcaagatgt ttttgatccc 600 agagtttaaa acccaacctt tcaaacagtg tttccttctt cttagagtac aatgtttctg 660 agaagagacc tctggaattc tggcctaagt gtatttaatg cccgggtaaa gaaagtgaga 720 gaacatttct ctttaggggc tgctgctgga tttctaaaaa gaaaataatt tctcagctag 780 taacatggag ccaaacaaca gcttcacaag actctgggtt ctttagccct catctccttc 840 attccaccct ctttataacc agtccttctt gtttttcccc tcccagcttt gttcagcagc 900 atgctttcac ccagaccttg tcttgtcact catccctact cgccatcatt ctttcattcc 960 tcttggccca atctctctcc accacttcct gcctacatgt atgtaggtta ttcatttccc 1020 tctcttgatt ccccccaccc aactctcttt ctccatttct tgcctttcag aagaacatgt 1080 gatcatccag gccgagttct atctgaatcc tgaccaatca ggcgagttta tgtttgactt 1140 tgatggtgat gagattttcc atgtggatat ggcaaagaag gagacggtct ggcggcttga 1200 agaatttgga cgatttgcca gctttgaggc tcaaggtgca ttggccaaca tagctgtgga 1260 caaagccaac ctggaaatca tgacaaagcg ctccaactat actccgatca ccaatggtac 1320 ctccctctct gctgcactcc tggacatggg aatccatagt ttgaaagtag ttgcttcagc 1380 tctttgtgtt agattattgt aactgatttt ccctccaagg gcctaacctt gccattaaca 1440 agccccaaat tctcatgcca gaggtctgag aactttatgg gtttgatcct atcttgttgt 1500 gctcaagtct tgtctctgtc atccatggtc tcctacgaag tcattgccct aagttcatgc 1560 taggggagcc agaagggaag tccttggata tcttatacct caatattggc tcaatttctt 1620 ggggaggggg tgctgtcaga gattgttatc tgaggatgtg acatagattt ctcagggcac 1680 aatttcaact actttttcag ctttagggtt tttagatacg tttgtaccac aattgagcat 1740 gggagggaga ggggtgagcc taagcagtga tggctgattt ctgtcacgtc tgtcatgtgt 1800 cccccagtac ctccagaggt aactgtgctc acgaacagcc ctgtggaact gagagagccc 1860 aacgtcctca tctgtttcat cgacaagttc accccaccag tggtcaatgt cacgtggctt 1920 cgaaatggaa aacctgtcac cacaggagtg tcagagacag tcttcctgcc cagggaagac 1980 caccttttcc gcaagttcca ctatctcccc ttcctgccct caactgagga cgtttacgac 2040 tgcagggtgg agcactgggg cttggatgag cctcttctca agcactgggg tatggaccaa 2100 cactcaatct cctttatttc aaggtttcct cctatgatgc ttgtgtgaaa ctcggtgttc 2160 taactgtttc ataatatctg ctacaattaa tataactgtc ttctcctact atccagcttc 2220 ctcctttttt taatctgtaa ttctctcaat acatcattct gtcttcctct tctttaatct 2280 atgaataact tttctcttta ttaagaaccc tacatttgat tctgagtgtt acttcttccc 2340 acactcatta ccatgtactc tgccttatct cccccagagt ttgatgctcc aagccctctc 2400 ccagagacta cagagaacgt ggtgtgtgcc ctgggcctga ctgtgggtct ggtgggcatc 2460 attattggga ccatcttcat catcaaggga gtgcgcaaaa gcaatgcagc agaacgcagg 2520 gggcctctgt aaggcacatg gaggtgagtt aggtgtggtc agaggaagac atatatggag 2580 atatctgagg gaggaaaaca gggtggggaa aggaaatgta atgcatttaa gagacaaggt 2640 aggaacagat gtggctcttg atttctcttt gctagaatga atcagacatt ggtatcatct 2700 ggtatcccaa agcttcaggg tctgtcatcc ctttctatag acgggcacct tgatcacggc 2760 tccagtctta gaaatcatct ccagtaccta aaaccattgt ttcacattag aatactgagt 2820 ctagggatct agaaaataca ttagaatatg gagtctaggg atctagaaaa tactgagtct 2880 agggatctag aaaaataagc ctcaagattt gggcacatcc tagcttgtat ttcttggggc 2940 aggtcatcag ttcagaagca tttccagatc ctggctcctt tcaggttagg gtcaattcat 3000 tgcatgaaat gggaatctct tagaggccaa tgcctgcttt tgcttcttta gtctcaaatg 3060 tagtatgaga aactctaaaa aaaggtaaag catggttgct tattatgttc agttggagag 3120 taggaactaa ctgtatacag ttagttcatg ttggaaaggt tagatgaaca ttgaaagaat 3180 tttgcaaagt caaaggatta agagagaaga ggaaggaatc tgaagcaagg agctcaatgc 3240 ggatcttaaa ttccttggta actatgtgtg tcttgctata ggtgatggtg tttcttagag 3300 agaagatcac tgaagaaact tctgctttaa tgactttaca aagctggcaa tattacaatc 3360 cttgacctca gtgaaagcag tcatcttcag cgttttccag ccctatagcc accccaagtg 3420 tggttatgcc tcctcgattg ctccgtactc taacatctag ctggcttccc tgtctattgc 3480 cttttcctgt atctattttc ctctatttcc tatcatttta ttatcaccat gcaatgcctc 3540 tggaataaaa catacaggag tctgtctctg ctatggaatg ccccatgggg catctcttgt 3600 gtacttattg tttaaggttt cctcaaactg tgatttttct gaacacaata aactattttg 3660 atgatcttgg gtggaatttt tggtggatcc tttcccggta aaatatctga atgttgaatt 3720 tatcttataa attctagaat tc 3742 //