Dbfetch

ID   HQ589110; SV 1; linear; genomic DNA; STD; HUM; 652 BP.
XX
AC   HQ589110;
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DT   15-MAR-2011 (Rel. 108, Created)
DT   15-MAR-2011 (Rel. 108, Last updated, Version 1)
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DE   Homo sapiens isolate cell ID D10015176 MHC class I antigen (HLA-DQB) gene,
DE   HLA-DQB1*04:01:01 variant allele, partial cds.
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KW   .
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RP   1-652
RA   Qu J., Li J., Chen H., Zheng Z., Liao K., Wang L., Zhou M., Huang C.,
RA   Hu Z., Yin J., Deng X., Cen Y., Zhang W., Zhang M., Tang J., Liang J.,
RA   Cheng Z., Long Y., Lan Z., Ye M., Zhen H., Zhang H., Tian Z., Hua S.,
RA   Tao D., Chen C., Pan J., Liu X., Xue Y., Wu S., Zhang K., Zhu H., Huang H.,
RA   Zhou C., Yang X., Ni J., Mai L., Zheng K., Liu B., Tang L., Zhang L.,
RA   Shen M., Huang J., Song X., Yi X., Wen J., Qian P., Wang Y., Wu D., Fan Z.,
RA   Zheng M., Liu P.;
RT   "Identification of novel HLA alleles";
RL   Unpublished.
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RN   [2]
RP   1-652
RA   Qu J., Li J., Chen H., Zheng Z., Liao K., Wang L., Zhou M., Huang C.,
RA   Hu Z., Yin J., Deng X., Cen Y., Zhang W., Zhang M., Tang J., Liang J.,
RA   Cheng Z., Long Y., Lan Z., Ye M., Zhen H., Zhang H., Tian Z., Hua S.,
RA   Tao D., Chen C., Pan J., Liu X., Xue Y., Wu S., Zhang K., Zhu H., Huang H.,
RA   Zhou C., Yang X., Ni J., Mai L., Zheng K., Liu B., Tang L., Zhang L.,
RA   Shen M., Huang J., Song X., Yi X., Wen J., Qian P., Wang Y., Wu D., Fan Z.,
RA   Zheng M., Liu P.;
RT   ;
RL   Submitted (08-NOV-2010) to the INSDC.
RL   Healthcare Dep., BGI, Beishan Industrial Zone, Yantian District, Shenzhen,
RL   Guangdong 518083, China
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DR   MD5; 4a98057f3a2864ce7ee3dcec398c2e15.
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FH   Key             Location/Qualifiers
FH
FT   source          1..652
FT                   /organism="Homo sapiens"
FT                   /isolate="cell ID D10015176"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gene            <1..>652
FT                   /gene="HLA-DQB"
FT                   /allele="HLA-DQB1*04:01:01 variant"
FT   mRNA            join(<1..270,371..>652)
FT                   /gene="HLA-DQB"
FT                   /allele="HLA-DQB1*04:01:01 variant"
FT                   /product="MHC class I antigen"
FT   CDS             join(<1..270,371..>652)
FT                   /codon_start=3
FT                   /gene="HLA-DQB"
FT                   /allele="HLA-DQB1*04:01:01 variant"
FT                   /product="MHC class I antigen"
FT                   /db_xref="GOA:F2XI66"
FT                   /db_xref="IMGT/HLA:DQB1*04:08"
FT                   /db_xref="InterPro:IPR000353"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR014745"
FT                   /db_xref="UniProtKB/TrEMBL:F2XI66"
FT                   /protein_id="ADZ38976.1"
FT                   /translation="DFVFQFKGMCYFTNGTELVRGVTRYIYNREEYARFDSDVGVYRAV
FT                   TPLGRLDAEYWNSQKDILEEDRASVDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEAL
FT                   NHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQHG
FT                   DVYTCHVEHPSLQNPIIVEW"
FT   gap             271..370
FT                   /estimated_length=unknown
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SQ   Sequence 652 BP; 124 A; 161 C; 165 G; 102 T; 100 other;
     aggatttcgt gttccagttt aagggcatgt gctacttcac caacgggacc gagctcgtgc        60
     ggggtgtgac cagatacatc tataaccgag aggagtacgc gcgcttcgac agcgacgtgg       120
     gggtgtatcg ggcggtgacg ccgctggggc ggcttgacgc cgagtactgg aatagccaga       180
     aggacatcct ggaggaggac cgggcgtcgg tggacaccgt atgcagacac aactaccagt       240
     tggagctccg cacgaccttg cagcggcgag nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       360
     nnnnnnnnnn tggagcccac agtgaccatc tccccatcca ggacagaggc cctcaaccac       420
     cacaacctgc tggtctgctc agtgacagat ttctatccag cccagatcaa agtccggtgg       480
     tttcggaatg accaggagga gacaactggc gttgtgtcca ccccccttat taggaacggt       540
     gactggacct tccagatcct ggtgatgctg gaaatgactc cccagcatgg agacgtctac       600
     acctgccacg tggagcaccc cagcctccag aaccccatca tcgtggagtg gc               652
//