Dbfetch

ID   HQ399497; SV 1; linear; genomic DNA; STD; HUM; 1862 BP.
XX
AC   HQ399497;
XX
DT   20-APR-2011 (Rel. 108, Created)
DT   24-OCT-2011 (Rel. 110, Last updated, Version 2)
XX
DE   Homo sapiens MHC class I antigen (HLA-C) gene, HLA-C*07 variant allele,
DE   partial cds.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-1862
RX   DOI; 10.1111/j.1399-0039.2011.01701.x.
RX   PUBMED; 21615337.
RA   He L., Deng Z., Xu Y., Wang D.;
RT   "Characterization of a novel variant allele, HLA-C*07:01:19, identified in
RT   a Chinese Han individual";
RL   Tissue Antigens 78(4):291-292(2011).
XX
RN   [2]
RP   1-1862
RA   Deng Z.;
RT   "Characterization of a novel HLA-C*07 variant allele with codon 222 GAG>GAA
RT   silent mutation othe the C*07:01:01 basis";
RL   Unpublished.
XX
RN   [3]
RP   1-1862
RA   Deng Z.;
RT   ;
RL   Submitted (12-OCT-2010) to the INSDC.
RL   Immunogenetics Laboratory, Shenzhen Blood Center, Nigang Xi Road, Meigang
RL   Nan Street, Shenzhen, Guangdong 518035, China
XX
DR   MD5; 1e08fc92fd831fe6467af8f476f62874.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1862
FT                   /organism="Homo sapiens"
FT                   /chromosome="6"
FT                   /map="6p21.31"
FT                   /mol_type="genomic DNA"
FT                   /PCR_primers="fwd_seq: ccaatcagcgtctccgcagtc, rev_seq:
FT                   accccycatycccctccttac"
FT                   /db_xref="taxon:9606"
FT   gene            <1..>1862
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*07 variant"
FT   mRNA            join(<1..73,204..473,724..999,1587..>1862)
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*07 variant"
FT                   /product="MHC class I antigen"
FT   CDS             join(1..73,204..473,724..999,1587..>1862)
FT                   /codon_start=1
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*07 variant"
FT                   /product="MHC class I antigen"
FT                   /db_xref="IMGT/HLA:C*07:01:19"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="InterPro:IPR037055"
FT                   /db_xref="UniProtKB/TrEMBL:F5A4J5"
FT                   /protein_id="AEB71531.1"
FT                   /translation="MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPR
FT                   FISVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQNYKRQAQADRVSLRN
FT                   LRGYYNQSEDGSHTLQRMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTA
FT                   AQITQRKLEAARAAEQLRAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHE
FT                   ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRY
FT                   TCHMQHEGLQEPLTLSW"
XX
SQ   Sequence 1862 BP; 344 A; 582 C; 615 G; 321 T; 0 other;
     atgcgggtca tggcgccccg agccctcctc ctgctgctct cgggaggcct ggccctgacc        60
     gagacctggg cctgtgagtg cggggttggg agggaagcgg cctctgcgga gaggagcgag       120
     gggcccgccc ggcgagggcg caggacccgg ggagccgcgc agggaggtgg gtcgggcggg       180
     tctcagcccc tcctcgcccc caggctccca ctccatgagg tatttcgaca ccgccgtgtc       240
     ccggcccggc cgcggagagc cccgcttcat ctcagtgggc tacgtggacg acacgcagtt       300
     cgtgcggttc gacagcgacg ccgcgagtcc gagaggggag ccgcgggcgc cgtgggtgga       360
     gcaggagggg ccggagtatt gggaccggga gacacagaac tacaagcgcc aggcacaggc       420
     tgaccgagtg agcctgcgga acctgcgcgg ctactacaac cagagcgagg acggtgagtg       480
     accccggccc ggggcgcagg tcacgacccc tccccatccc ccacggacgg cccgggtcgc       540
     cccgagtctc cccgtctgag atccacccca aggtggatct gcggaacccg cccagaccct       600
     cgaccggaga gagccccagt cgcctttacc cggtttcatt ttcggtttag gccaaaatcc       660
     ccgcgggttg gtcggggcgg ggcggggctc gggggactgg gctgaccgcg ggggcggggc       720
     cagggtctca caccctccag aggatgtatg gctgcgacct ggggcccgac gggcgcctcc       780
     tccgcgggta tgaccagtcc gcctacgacg gcaaggatta catcgccctg aacgaggacc       840
     tgcgctcctg gaccgccgcg gacaccgcgg ctcagatcac ccagcgcaag ttggaggcgg       900
     cccgtgcggc ggagcagctg agagcctacc tggagggcac gtgcgtggag tggctccgca       960
     gatacctgga gaacgggaag gagacgctgc agcgcgcagg taccaggggc agtggggagc      1020
     cttccccatc tcctatagat ctcccgggat ggcctcccac gaggagggga ggaaaatggg      1080
     atcagcactg gaatatcgcc ctcccttgaa tggagaatgg catgagtttt cctgagtttc      1140
     ctctgagggc cccctctgct ctctaggaca attaagggat gaagtctctg aggaaatgga      1200
     ggggaagaca gtccctggaa tactgatcag gggtctcctt tgaccacttt gaccactgca      1260
     gcagctgtgg tcaggctgct gacctttctc tcaggccttg ttctctgcct cacactcaat      1320
     gtgtctgaag gtttgattcc agcttttctg agtcctgcag cctccactca ggtcaggacc      1380
     agaagtcgct gttcctccct cagagactag aactttccaa tgaataggag attatcccag      1440
     gtgcctgtgt ccaggctggc gtctgggttc tgtgccgcct tccccacccc aggtgtcctg      1500
     tccattctca ggatggtcac atgggcgctg ctggagtgtc ccaagagaga tgcaaagtgt      1560
     ctgaattttc tgactcttcc cgtcagaacc cccaaagaca cacgtgaccc accaccccct      1620
     ctctgaccat gaggccaccc tgaggtgctg ggccctgggc ttctaccctg cggagatcac      1680
     actgacctgg cagcgggatg gggaagacca gacccaggac accgagcttg tggagaccag      1740
     gccagcagga gatggaacct tccagaagtg ggcagctgtg gtggtgcctt ctggacaaga      1800
     gcagagatac acgtgccata tgcagcacga ggggctgcaa gagcccctca ccctgagctg      1860
     gg                                                                     1862
//