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EBI Dbfetch

ID   HM122207; SV 1; linear; genomic DNA; STD; HUM; 1673 BP.
XX
AC   HM122207;
XX
DT   19-APR-2011 (Rel. 108, Created)
DT   19-APR-2011 (Rel. 108, Last updated, Version 1)
XX
DE   Homo sapiens nonfunctional MHC class I antigen (HLA-B) gene,
DE   HLA-B*40:02:01variant2 allele, partial sequence.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-1673
RA   Qu J., Li J., Du J., Chen H., Liao K., Tian Z., Zhen H., Chen Y., Huang C.,
RA   Wang L., Shen M., Zhang H., Jiang F.;
RT   "Identification of 47 novel HLA-B alleles";
RL   Unpublished.
XX
RN   [2]
RP   1-1673
RA   Qu J., Li J., Du J., Chen H., Liao K., Tian Z., Zhen H., Chen Y., Huang C.,
RA   Wang L., Shen M., Zhang H., Jiang F.;
RT   ;
RL   Submitted (14-APR-2010) to the INSDC.
RL   Beijing Genomics Institute, Shenzhen, Beishan Industrial Zone, Yantian
RL   District, Shenzhen, Guangdong 518083, China
XX
DR   MD5; a1b1c062bfb870d94db066fadfa053e4.
DR   IMGT/HLA; B*40:142N; HLA05284.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1673
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /country="China"
FT                   /db_xref="taxon:9606"
FT   gene            <1..>1673
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*40:02:01variant2"
FT   misc_feature    join(1..73,174..442,543..818,919..1194,1295..1411,
FT                   1512..1544,1645..>1673)
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*40:02:01variant2"
FT                   /note="nonfunctional MHC class I antigen due to mutation;
FT                   human leukocyte antigen"
FT   exon            <1..73
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*40:02:01variant2"
FT                   /number=1
FT   gap             74..173
FT                   /estimated_length=unknown
FT   exon            174..442
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*40:02:01variant2"
FT                   /number=2
FT   gap             443..542
FT                   /estimated_length=unknown
FT   exon            543..818
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*40:02:01variant2"
FT                   /number=3
FT   gap             819..918
FT                   /estimated_length=unknown
FT   exon            919..1194
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*40:02:01variant2"
FT                   /number=4
FT   gap             1195..1294
FT                   /estimated_length=unknown
FT   exon            1295..1411
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*40:02:01variant2"
FT                   /number=5
FT   gap             1412..1511
FT                   /estimated_length=unknown
FT   exon            1512..1544
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*40:02:01variant2"
FT                   /number=6
FT   gap             1545..1644
FT                   /estimated_length=unknown
FT   exon            1645..>1673
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*40:02:01variant2"
FT                   /number=7
XX
SQ   Sequence 1673 BP; 217 A; 330 C; 360 G; 166 T; 600 other;
     atgcgggtca cggcgccccg aaccctcctc ctgctgctct ggggggcagt ggccctgacc        60
     gagacctggg ctgnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       120
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnngctccca       180
     ctccatgagg tatttccaca cctccgtgtc ccggcccggc cgcggggagc cccgcttcat       240
     caccgtgggc tacgtggacg acacgctgtt cgtgaggttc gacagcgacg ccacgagtcc       300
     gaggaaggag ccgcgggcgc catggataga gcaggagggg ccggagtatt ggaccgggag       360
     acacagatct ccaagaccaa cacacagact taccgagaga gcctgcggaa cctgcgcggc       420
     tactacaacc agagcgaggc cgnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       480
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       540
     nnggtctcac accctccaga gcatgtacgg ctgcgacgtg gggccggacg ggcgcctcct       600
     ccgcgggcat aaccagtacg cctacgacgg caaggattac atcgccctga acgaggacct       660
     gcgctcctgg accgccgcgg acacggcggc tcagatcacc cagcgcaagt gggaggcggc       720
     ccgtgtggcg gagcagctga gagcctacct ggagggcgag tgcgtggagt ggctccgcag       780
     atacctggag aacgggaagg agacgctgca gcgcgcggnn nnnnnnnnnn nnnnnnnnnn       840
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       900
     nnnnnnnnnn nnnnnnnnac cccccaaaga cacacgtgac ccaccacccc atctctgacc       960
     atgaggccac cctgaggtgc tgggccctgg gcttctaccc tgcggagatc acactgacct      1020
     ggcagcggga tggcgaggac caaactcagg acactgagct tgtggagacc agaccagcag      1080
     gagatagaac cttccagaag tgggcagctg tggtggtgcc ttctggagaa gagcagagat      1140
     acacatgcca tgtacagcat gaggggctgc cgaagcccct caccctgaga tgggnnnnnn      1200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnagccgt cttcccagtc caccgtcccc      1320
     atcgtgggca ttgttgctgg cctggctgtc ctagcagttg tggtcatcgg agctgtggtc      1380
     gctgctgtga tgtgtaggag gaagagctca gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1440
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1500
     nnnnnnnnnn ngtggaaaag gagggagcta ctctcaggct gcgtnnnnnn nnnnnnnnnn      1560
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1620
     nnnnnnnnnn nnnnnnnnnn nnnngcagcg acagtgccca gggctctgat gtg             1673
//


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