Dbfetch
ID HG973325; SV 1; linear; genomic DNA; STD; HUM; 2700 BP.
XX
AC HG973325;
XX
DT 17-APR-2014 (Rel. 120, Created)
DT 17-APR-2014 (Rel. 120, Last updated, Version 1)
XX
DE Homo sapiens partial HLA-A gene for MHC class I antigen, cell line
DE DKMS-LSL-A-101, allele HLA-A*11, exons 2-8
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-2700
RA Albrecht V.;
RT ;
RL Submitted (07-APR-2014) to the INSDC.
RL Albrecht V., Research and Development, DKMS LIFE SCIENCE LAB, Fiedler Str.
RL 34, Saxony, 01307 Dresden, GERMANY.
XX
RN [2]
RX DOI; https://doi.org/10.1111/tan.13057.
RX PUBMED; 28547825.
RA Albrecht V., Zweiniger C., Surendranath V., Lang K., Schofl G., Dahl A.,
RA Winkler S., Lange V., Bohme I., Schmidt A.H.;
RT "Dual redundant sequencing strategy: Full-length gene characterisation of
RT 1056 novel and confirmatory HLA alleles";
RL HLA. -:1-9(2017).
XX
DR MD5; 571ef222a883b2e729f642c17975caf7.
DR IMGT/HLA; HLA-A*11:203; HLA11941.
XX
FH Key Location/Qualifiers
FH
FT source 1..2700
FT /organism="Homo sapiens"
FT /chromosome="6"
FT /mol_type="genomic DNA"
FT /cell_line="DKMS-LSL-A-101"
FT /cell_type="blood cells"
FT /db_xref="taxon:9606"
FT CDS join(<1..270,512..787,1367..1642,1745..1861,2304..2336,
FT 2479..2526,2696..2700)
FT /codon_start=3
FT /gene="HLA-A"
FT /allele="HLA-A*11"
FT /product="MHC class I antigen"
FT /function="antigen presenting molecule"
FT /db_xref="GOA:X5MI15"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR010579"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:X5MI15"
FT /protein_id="CDO67968.1"
FT /translation="SHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRME
FT PRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEDGSHTIQIMYGCDVGP
FT DGRFLCGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHAAEQQRAYLEGRC
FT VEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGED
FT QTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWELSSQPTI
FT PIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSLTACKV
FT "
FT exon 1..270
FT /gene="HLA-A"
FT /allele="HLA-A*11"
FT /number=2
FT intron 271..511
FT /gene="HLA-A"
FT /allele="HLA-A*11"
FT /number=2
FT exon 512..787
FT /gene="HLA-A"
FT /allele="HLA-A*11"
FT /number=3
FT intron 788..1366
FT /gene="HLA-A"
FT /allele="HLA-A*11"
FT /number=3
FT exon 1367..1642
FT /gene="HLA-A"
FT /allele="HLA-A*11"
FT /number=4
FT intron 1643..1744
FT /gene="HLA-A"
FT /allele="HLA-A*11"
FT /number=4
FT exon 1745..1861
FT /gene="HLA-A"
FT /allele="HLA-A*11"
FT /number=5
FT intron 1862..2303
FT /gene="HLA-A"
FT /allele="HLA-A*11"
FT /number=5
FT exon 2304..2336
FT /gene="HLA-A"
FT /allele="HLA-A*11"
FT /number=6
FT intron 2337..2478
FT /gene="HLA-A"
FT /allele="HLA-A*11"
FT /number=6
FT exon 2479..2526
FT /gene="HLA-A"
FT /allele="HLA-A*11"
FT /number=7
FT intron 2527..2695
FT /gene="HLA-A"
FT /allele="HLA-A*11"
FT /number=7
FT exon 2696..2700
FT /gene="HLA-A"
FT /allele="HLA-A*11"
FT /number=8
XX
SQ Sequence 2700 BP; 533 A; 759 C; 828 G; 580 T; 0 other;
gctcccactc catgaggtat ttctacacct ccgtgtcccg gcccggccgc ggggagcccc 60
gcttcatcgc cgtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg 120
cgagccagag gatggagccg cgggcgccgt ggatagagca ggaggggccg gagtattggg 180
accaggagac acggaatgtg aaggcccagt cacagactga ccgagtggac ctggggaccc 240
tgcgcggcta ctacaaccag agcgaggacg gtgagtgacc ccggcccggg gcgcaggtca 300
cgacccctca tcccccacgg acgggccagg tggcccacag tctccgggtc cgagatccac 360
cccgaagccg cgggaccccg agacccttgc cccgggagag gcccaggcgc ctttacccgg 420
tttcattttc agtttaggcc aaaaatcccc ccgggttggt cggggccggg cagggcttgg 480
gggactgggc tgaccgcggg gtcggggcca ggttctcaca ccatccagat aatgtatggc 540
tgcgacgtgg ggccggacgg gcgcttcctc tgcgggtacc ggcaggacgc ctacgacggc 600
aaggattaca tcgccctgaa cgaggacctg cgctcttgga ccgcggcgga catggcagct 660
cagatcacca agcgcaagtg ggaggcggcc catgcggcgg agcagcagag agcctacctg 720
gagggccggt gcgtggagtg gctccgcaga tacctggaga acgggaagga gacgctgcag 780
cgcacgggta ccaggggcca cggggcgcct ccctgatcgc ctatagatct cccgggctgg 840
cctcccacaa ggaggggaga caattgggac caacactaga atatcaccct ccctctggtc 900
ctgagggaga ggaatcctcc tgggtttcca gatcctgtac cagagagtga ctctgaggtt 960
ccgccctgct ctctgacaca attaagggat aaaatctctg aaggagtgac gggaagacga 1020
tccctcgaat actgatgagt ggttcccttt gacaccggca gcagccttgg gcccgtgact 1080
tttcctctca ggccttgttc tctgcttcac actcaatgtg tgtgggggtc tgagtccagc 1140
acttctgagt ctctcagcct ccactcaggt caggaccaga agtcgctgtt cccttctcag 1200
ggaatagaag attatcccag gtgcctgtgt ccaggctggt gtctgggttc tgtgctctct 1260
tccccatccc gggtgtcctg tccattctca agatggccac atgcgtgctg gtggagtgtc 1320
ccatgacaga tgcaaaatgc ctgaattttc tgactcttcc cgtcagaccc ccccaagaca 1380
catatgaccc accaccccat ctctgaccat gaggccaccc tgaggtgctg ggccctgggc 1440
ttctaccctg cggagatcac actgacctgg cagcgggatg gggaggacca gacccaggac 1500
acggagctcg tggagaccag gcctgcaggg gatggaacct tccagaagtg ggcggctgtg 1560
gtggtgcctt ctggagagga gcagagatac acctgccatg tgcagcatga gggtctgccc 1620
aagcccctca ccctgagatg gggtaaggag ggagatgggg gtgtcatgtc tcttagggaa 1680
agcaggagcc tctctggaga cctttagcag ggtcagggcc cctcaccttc ccctcttttc 1740
ccagagctgt cttcccagcc caccatcccc atcgtgggca tcattgctgg cctggttctc 1800
cttggagctg tgatcactgg agctgtggtc gctgccgtga tgtggaggag gaagagctca 1860
ggtggagaag gggtgaaagg tggggtctga gatttcttgt ctcactgagg gttccaagcc 1920
ccagctagaa atgtgccctg tctcattact gggaagcacc ttccacaatc atgggccgac 1980
ccagcctggg ccctgtgtgc cagcacttac tcttttgtaa agcacctgtt aaaatgaagg 2040
acagatttat caccttgatt acggcggtga tgggacctga taccagcagt cacaagtcac 2100
aggggaaggt ccctgaggac agacctcagg agggctattg gtccaggacc cacacctgct 2160
ttcttcatgt ttcctgatcc cgccctgggt ctgcagtcac acatttctgg aaacttctct 2220
ggggtccaag actaggaggt tcctctagga ccttaaggcc ctggctcctt tctggtatct 2280
cacaggacat tttcttccca cagatagaaa aggagggagt tacactcagg ctgcaagtaa 2340
gtatgaagga ggctgatgcc tgaggtcctt gggatattgt gtttgggagc ccatggggga 2400
gctcacccac cccacaattc ctcctctagc cacatcttct gtgggatctg accaggttct 2460
gtttttgttc taccccaggc agtgacagtg cccagggctc tgatgtgtct ctcacagctt 2520
gtaaaggtga gagcttggag ggcctgatgt gtgttgggtg ttgggcggaa cagtggacac 2580
agctgtgcta tggggtttct ttgcattgga tgtattgagc atgcgatggg ctgtttaagg 2640
tgtgacccct cactgtgatg gatatgaatt tgttcatgaa tatttttttc tatagtgtga 2700
//