Dbfetch
ID HG794381; SV 1; linear; genomic DNA; STD; HUM; 3340 BP. XX AC HG794381; XX DT 12-DEC-2013 (Rel. 119, Created) DT 12-DEC-2013 (Rel. 119, Last updated, Version 1) XX DE Homo sapiens HLA-B gene for MHC class I antigen, allele HLA-B*42:01:01 XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3340 RA McWhinnie A.J.; RT ; RL Submitted (27-NOV-2013) to the INSDC. RL McWhinnie A.J., HLA Group, Anthony Nolan Research Institute, Fleet Road, RL Hampstead, London, NW3 2QG, UNITED KINGDOM. XX RN [2] RA McWhinnie A.J., Robinson J.; RT "Confirmatory typing of HLA-B*42:01:01"; RL Unpublished. XX DR MD5; 9c3b8ca779c617768749e89f2a916d05. DR IMGT/HLA; HLA-B*42:01:01; HLA00315. XX FH Key Location/Qualifiers FH FT source 1..3340 FT /organism="Homo sapiens" FT /chromosome="6" FT /map="6p21.3" FT /mol_type="genomic DNA" FT /cell_line="SHJO" FT /tissue_type="lymphoblastoid cell line" FT /db_xref="taxon:9606" FT CDS join(303..375,504..773,1020..1295,1868..2143,2237..2353, FT 2795..2827,2934..2977) FT /gene="HLA-B" FT /allele="HLA-B*42:01:01" FT /product="MHC class I antigen" FT /function="antigen presenting molecule" FT /db_xref="GOA:V6E0U6" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:V6E0U6" FT /protein_id="CDK41190.1" FT /translation="MLVMAPRTVLLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPR FT FISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRN FT LRGYYNQSEAGSHTLQSMYGCDVGPDGRLLRGHNQYAYDGKDYIALNEDLRSWTAADTA FT AQITQRKWEAARVAEQDRAYLEGTCVEWLRRYLENGKDTLERADPPKTHVTHHPISDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGK FT GGSYSQAACSDSAQGSDVSLTA" FT exon <303..375 FT /gene="HLA-B" FT /allele="HLA-B*42:01:01" FT /number=1 FT intron 376..503 FT /gene="HLA-B" FT /allele="HLA-B*42:01:01" FT /number=1 FT exon 504..773 FT /gene="HLA-B" FT /allele="HLA-B*42:01:01" FT /number=2 FT intron 774..1019 FT /gene="HLA-B" FT /allele="HLA-B*42:01:01" FT /number=2 FT exon 1020..1295 FT /gene="HLA-B" FT /allele="HLA-B*42:01:01" FT /number=3 FT intron 1296..1867 FT /gene="HLA-B" FT /allele="HLA-B*42:01:01" FT /number=3 FT exon 1868..2143 FT /gene="HLA-B" FT /allele="HLA-B*42:01:01" FT /number=4 FT intron 2144..2236 FT /gene="HLA-B" FT /allele="HLA-B*42:01:01" FT /number=4 FT exon 2237..2353 FT /gene="HLA-B" FT /allele="HLA-B*42:01:01" FT /number=5 FT intron 2354..2794 FT /gene="HLA-B" FT /allele="HLA-B*42:01:01" FT /number=5 FT exon 2795..2827 FT /gene="HLA-B" FT /allele="HLA-B*42:01:01" FT /number=6 FT intron 2828..2933 FT /gene="HLA-B" FT /allele="HLA-B*42:01:01" FT /number=6 FT exon 2934..>2977 FT /gene="HLA-B" FT /allele="HLA-B*42:01:01" FT /number=7 XX SQ Sequence 3340 BP; 615 A; 969 C; 1057 G; 699 T; 0 other; ttggtgtagg agaagaggga tcaggacgaa gtcccaggtc ccggacgggg ctctcagggt 60 ctcaggctcc gagggccgcg tctgcaatgg ggaggcgcag cgttggggat tccccactcc 120 cctgagtttc acttcttctc ccaacttgtg tcgggtcctt cttccaggat actcgtgacg 180 cgtccccact tcccactccc attgggtatt ggatatctag agaagccaat cagcgtcgcc 240 gcggtcccag ttctaaagtc cccacgcacc cacccggact cagagtctcc tcagacgccg 300 agatgctggt catggcgccc cgaaccgtcc tcctgctgct ctcggcggcc ctggccctga 360 ccgagacctg ggccggtgag tgcgggtcgg gagggaaatg gcctctgccg ggaggagcga 420 ggggaccgca ggcgggggcg caggacctga ggagccgcgc cgggaggagg gtcgggcggg 480 tctcagcccc tcctcacccc caggctccca ctccatgagg tatttctaca cctccgtgtc 540 ccggcccggc cgcggggagc cccgcttcat ctcagtgggc tacgtggacg acacccagtt 600 cgtgaggttc gacagcgacg ccgcgagtcc gagagaggag ccgcgggcgc cgtggataga 660 gcaggagggg ccggagtatt gggaccggaa cacacagatc tacaaggccc aggcacagac 720 tgaccgagag agcctgcgga acctgcgcgg ctactacaac cagagcgagg ccggtgagtg 780 accccggccc ggggcgcagg tcacgactcc ccatccccca cggacggccc gggtcgcccc 840 gagtctccgg gtccgagatc cgcctccctg aggccgcggg acccgcccag accctcgacc 900 ggcgagagcc ccaggcgcgt ttacccggtt tcattttcag ttgaggccaa aatccccgcg 960 ggttggtcgg ggcggggcgg ggctcggggg gacggggctg accgcggggc cggggccagg 1020 gtctcacacc ctccagagca tgtacggctg cgacgtgggg ccggacgggc gcctcctccg 1080 cgggcataac cagtacgcct acgacggcaa ggattacatc gccctgaacg aggacctgcg 1140 ctcctggacc gcggcggaca ccgcggctca gatcacccag cgcaagtggg aggcggcccg 1200 tgtggcggag caggacagag cctacctgga gggcacgtgc gtggagtggc tccgcagata 1260 cctggagaac gggaaggaca cgctggagcg cgcgggtacc aggggcagtg gggagccttc 1320 cccatctcct ataggtcgcc ggggatggcc tcccacgaga agaggaggaa aatgggatca 1380 gcgctagaat gtcgccctcc cttgaatgga gaatggcatg agttttcctg agtttcctct 1440 gagggccccc tcttctctct agacaattaa gggatgacgt ctctgaggaa atggagggga 1500 agacagtccc tagaatactg atcaggggtc ccctttgacc cctgcagcag ccttgggaac 1560 cgtgactttt cctctcaggc cttgttctct gcctcacact cagtgtgttt ggggctctga 1620 ttccagcact tctgagtcac tttacctcca ctcagatcag gagcagaagt ccctgttccc 1680 cgctcagaga ctcgaacttt ccaatgaata ggagattatc ccaggtgcct gcatccgctg 1740 gtgtctgggt tctgtgcccc ttccccaccc caggtgtcct gtccattctc aggctggtca 1800 catgggtggt cctagggtgt gccatgagag atgcaaagcg cctgaatttt ctgactcttc 1860 ccatcagacc ccccaaagac acacgtgacc caccacccca tctctgacca tgaggccacc 1920 ctgaggtgct gggccctggg cttctaccct gcggagatca cactgacctg gcagcgggat 1980 ggcgaggacc aaactcagga cactgagctt gtggagacca gaccagcagg agatagaacc 2040 ttccagaagt gggcagctgt ggtggtgcct tctggagaag agcagagata cacatgccat 2100 gtacagcatg aggggctgcc gaagcccctc accctgagat ggggtaagga gggggatgag 2160 gggtcatatc tcttctcagg gaaagcagga gcccttcagc agggtcaggg cccctcatct 2220 tcccctcctt tcccagagcc gtcttcccag tccaccgtcc ccatcgtggg cattgttgct 2280 ggcctggctg tcctagcagt tgtggtcatc ggagctgtgg tcgctgctgt gatgtgtagg 2340 aggaagagct caggtaggga aggggtgagg ggtggggtct gggttttctt gtcccactgg 2400 gggtttcaag ccccaggtag aagtgttccc tgcctcatta ctgggatgca gcatccacac 2460 aggggctaac gcagcctggg accctgtgtg ccagcactta ctcttttgtg cagcacatgt 2520 gacaatgaag gacggatgta tcaccttggt ggttgtggtg ttggggtcct gattccagca 2580 ttcatgagtc aggggaaggt ccctgctaag gacagacctt aggagggcag ttggtccagg 2640 acccacactt gctttcctcg tgtttcctga tcctgccttg ggtctgtagt catacttctg 2700 gaaattcctt ttgggtccaa gacgaggagg ttcctctaag atctcatggc cctgcttcct 2760 cccagtcccc tcacagggca ttttcttccc acaggtggaa aaggagggag ctactctcag 2820 gctgcgtgta agtgatgggg gtgggagtgt ggaggagctc acccacccca taattcctcc 2880 tgtcccacgt ctcctgcggg ctctgaccag gtcctgtttt tgttctactc caggcagcga 2940 cagtgcccag ggctctgatg tgtctctcac agcttgaaaa ggtgagattc ttggggtcta 3000 gagtgggtgg ggtggcgggt ctgggggtgg gtggggcagt ggggaaaggc ctgggtaatg 3060 gagattcttt gattgggatg tttcgcgtgt gtggtgggct gtttagagtg tcatcactta 3120 ccatgactaa ccagaatttg ttcatgactg ttgttttctg tagcctgaga cagctgtctt 3180 gtgagggact gagatgcagg atttcttcac gcctcccctt tgtgacttca agagcctctg 3240 gcatctcttt ctgcaaaggc acctgaatgt gtctgcgtcc ctgttagcat aatgtgagga 3300 ggtggagaga cagcccaccc ttgtgtccac tgtgacccct 3340 //