Dbfetch
ID HG794378; SV 1; linear; genomic DNA; STD; HUM; 3374 BP. XX AC HG794378; XX DT 12-DEC-2013 (Rel. 119, Created) DT 12-DEC-2013 (Rel. 119, Last updated, Version 1) XX DE Homo sapiens HLA-C gene for MHC class I antigen, cell line LK707, allele DE HLA-C*07:01:01:01 XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3374 RA McWhinnie A.J.; RT ; RL Submitted (27-NOV-2013) to the INSDC. RL McWhinnie A.J., HLA Group, Anthony Nolan Research Institute, Fleet Road, RL Hampstead, London, NW3 2QG, UNITED KINGDOM. XX RN [2] RA McWhinnie A.J., Robinson J.; RT "Confirmatory sequencing of HLA-C*07:01:01:01"; RL Unpublished. XX DR MD5; 7c67a6e926b81afddab39409ba8cc056. DR Ensembl-Gn; ENSG00000233841; homo_sapiens. DR Ensembl-Tr; ENST00000424832; homo_sapiens. DR IMGT/HLA; HLA-C*07:01:01:01; HLA00433. XX FH Key Location/Qualifiers FH FT source 1..3374 FT /organism="Homo sapiens" FT /chromosome="6" FT /map="6p21.3" FT /mol_type="genomic DNA" FT /cell_line="LK707" FT /tissue_type="lymphoblastoid cell line" FT /db_xref="taxon:9606" FT CDS join(301..373,504..773,1024..1299,1887..2162,2287..2406, FT 2847..2879,2987..3034,3199..3203) FT /gene="HLA-C" FT /allele="HLA-C*07:01:01:01" FT /product="MHC class I antigen" FT /function="antigen presenting molecule" FT /db_xref="GOA:O19617" FT /db_xref="HGNC:HGNC:4933" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:O19617" FT /protein_id="CDK41187.1" FT /translation="MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPR FT FISVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQNYKRQAQADRVSLRN FT LRGYYNQSEDGSHTLQRMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTA FT AQITQRKLEAARAAEQLRAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRY FT TCHMQHEGLQEPLTLSWEPSSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGG FT KGGSCSQAACSNSAQGSDESLITCKA" FT exon <301..373 FT /gene="HLA-C" FT /allele="HLA-C*07:01:01:01" FT /number=1 FT intron 374..503 FT /gene="HLA-C" FT /allele="HLA-C*07:01:01:01" FT /number=1 FT exon 504..773 FT /gene="HLA-C" FT /allele="HLA-C*07:01:01:01" FT /number=2 FT intron 774..1023 FT /gene="HLA-C" FT /allele="HLA-C*07:01:01:01" FT /number=2 FT exon 1024..1299 FT /gene="HLA-C" FT /allele="HLA-C*07:01:01:01" FT /number=3 FT intron 1300..1886 FT /gene="HLA-C" FT /allele="HLA-C*07:01:01:01" FT /number=3 FT exon 1887..2162 FT /gene="HLA-C" FT /allele="HLA-C*07:01:01:01" FT /number=4 FT intron 2163..2286 FT /gene="HLA-C" FT /allele="HLA-C*07:01:01:01" FT /number=4 FT exon 2287..2406 FT /gene="HLA-C" FT /allele="HLA-C*07:01:01:01" FT /number=5 FT intron 2407..2846 FT /gene="HLA-C" FT /allele="HLA-C*07:01:01:01" FT /number=5 FT exon 2847..2879 FT /gene="HLA-C" FT /allele="HLA-C*07:01:01:01" FT /number=6 FT intron 2880..2986 FT /gene="HLA-C" FT /allele="HLA-C*07:01:01:01" FT /number=6 FT exon 2987..3034 FT /gene="HLA-C" FT /allele="HLA-C*07:01:01:01" FT /number=7 FT intron 3035..3198 FT /gene="HLA-C" FT /allele="HLA-C*07:01:01:01" FT /number=7 FT exon 3199..>3203 FT /gene="HLA-C" FT /allele="HLA-C*07:01:01:01" FT /number=8 XX SQ Sequence 3374 BP; 625 A; 994 C; 1053 G; 702 T; 0 other; gcttggtgta ggagaagagg gatcaggacg aagtcccagg tcccgggcgg ggctctcagg 60 gtctcaggct ccaagggccg tgtctgcatt ggggaggcgc cgcgttgggg attctccact 120 cccctgagtt tcacttctcc caacctgcgt cgggtccttc ttcctgaata ctcatgacgc 180 gtccccaatt cccactccca ttgggtgtcg ggttctagag aagccaatca gcgtctccgc 240 agtcccggtt ctaaagtccc cagtcaccca cccggactca cattctcccc agaggccgag 300 atgcgggtca tggcgccccg agccctcctc ctgctgctct cgggaggcct ggccctgacc 360 gagacctggg cctgtgagtg cggggttggg agggaagcgg cctctgcgga gaggagcgag 420 gggcccgccc ggcgagggcg caggacccgg ggagccgcgc agggaggtgg gtcgggcggg 480 tctcagcccc tcctcgcccc caggctccca ctccatgagg tatttcgaca ccgccgtgtc 540 ccggcccggc cgcggagagc cccgcttcat ctcagtgggc tacgtggacg acacgcagtt 600 cgtgcggttc gacagcgacg ccgcgagtcc gagaggggag ccgcgggcgc cgtgggtgga 660 gcaggagggg ccggagtatt gggaccggga gacacagaac tacaagcgcc aggcacaggc 720 tgaccgagtg agcctgcgga acctgcgcgg ctactacaac cagagcgagg acggtgagtg 780 accccggccc ggggcgcagg tcacgacccc tccccatccc ccacggacgg cccgggtcgc 840 cccgagtctc cccgtctgag atccacccca aggtggatct gcggaacccg cccagaccct 900 cgaccggaga gagccccagt cgcctttacc cggtttcatt ttcggtttag gccaaaatcc 960 ccgcgggttg gtcggggcgg ggcggggctc gggggactgg gctgaccgcg ggggcggggc 1020 cagggtctca caccctccag aggatgtatg gctgcgacct ggggcccgac gggcgcctcc 1080 tccgcgggta tgaccagtcc gcctacgacg gcaaggatta catcgccctg aacgaggacc 1140 tgcgctcctg gaccgccgcg gacaccgcgg ctcagatcac ccagcgcaag ttggaggcgg 1200 cccgtgcggc ggagcagctg agagcctacc tggagggcac gtgcgtggag tggctccgca 1260 gatacctgga gaacgggaag gagacgctgc agcgcgcagg taccaggggc agtggggagc 1320 cttccccatc tcctatagat ctcccgggat ggcctcccac gaggagggga ggaaaatggg 1380 atcagcactg gaatatcgcc ctcccttgaa tggagaatgg catgagtttt cctgagtttc 1440 ctctgagggc cccctctgct ctctaggaca attaagggat gaagtctctg aggaaatgga 1500 ggggaagaca gtccctggaa tactgatcag gggtctcctt tgaccacttt gaccactgca 1560 gcagctgtgg tcaggctgct gacctttctc tcaggccttg ttctctgcct cacactcaat 1620 gtgtctgaag gtttgattcc agcttttctg agtcctgcag cctccactca ggtcaggacc 1680 agaagtcgct gttcctccct cagagactag aactttccaa tgaataggag attatcccag 1740 gtgcctgtgt ccaggctggc gtctgggttc tgtgccgcct tccccacccc aggtgtcctg 1800 tccattctca ggatggtcac atgggcgctg ctggagtgtc ccaagagaga tgcaaagtgt 1860 ctgaattttc tgactcttcc cgtcagaacc cccaaagaca cacgtgaccc accaccccct 1920 ctctgaccat gaggccaccc tgaggtgctg ggccctgggc ttctaccctg cggagatcac 1980 actgacctgg cagcgggatg gggaggacca gacccaggac accgagcttg tggagaccag 2040 gccagcagga gatggaacct tccagaagtg ggcagctgtg gtggtgcctt ctggacaaga 2100 gcagagatac acgtgccata tgcagcacga ggggctgcaa gagcccctca ccctgagctg 2160 gggtaaggag gggaatgggg ggtcacatct cttatcagag aaagcagaag tccttctgga 2220 gcccttcagc cgggtcaggg ctgaggcttg ggggtcaggg cccctcacct tctcctcctt 2280 tcccagagcc atcttcccag cccaccatcc ccatcatggg catcgttgct ggcctggctg 2340 tcctggttgt cctagctgtc cttggagctg tggtcaccgc tatgatgtgt aggaggaaga 2400 gctcaggtag ggaaggggtg aagagcgggg tctgggtttt cttgtcccac tgggagtttc 2460 aagccccagg tagaagtgtg ccccgccttg ttactggaag caccatccac acatgggcca 2520 tcccagcctg ggaccctgtg tgccagcact tactcttttg tgaagcacat gtgacaatga 2580 aggacggatg tatcaccttg atgattatgg tgttggggtc ctgattccag cattcatgag 2640 tcaggggaag gtccctgcta aggacagacc ttaggagggc agttggtcca gaacccacaa 2700 ctgctttccc catgtttcct gatcctgccc tgggtctgca gtcgtagttc tggaaacttc 2760 tcttgggtcc aagactagga ggttccccta agatcacatg gccctgcctc ctcccagtcc 2820 cctcataggg cattttcttc ccacaggtgg aaaaggaggg agctgctctc aggctgcgtg 2880 taagtgatgg cggcgggcgt gtggaggagc tcacctactc cataattcct cttgtcccac 2940 atctcctgcg ggctctgacc aggtcttttt ttttgttcta ccccaggcag caacagtgcc 3000 cagggctctg atgagtctct catcacttgt aaaggtgaga ttctggggag ctgaagtggt 3060 cgggggtggg gcagagggaa aaggcctggg taatggggat tctttgattg ggacgtttcg 3120 agtgtgtggt gggccgttca gagtgtcatc acttaccatg actgacctga atttgttcat 3180 gactattgtg ttctgtagcc tgagacagct gcctgtgtgg gactgagatg caggatttct 3240 tcacacctct cctttgtgac ttcaagagcc tctggcatct ctttctgcaa aggcgtctga 3300 atgtgtctgc gttcctgtta gcataatgtg aggaggtgga gagacagccc acccccgtgt 3360 ccaccgtgac ccct 3374 //