Dbfetch

ID   HE995437; SV 1; linear; genomic DNA; STD; HUM; 1026 BP.
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AC   HE995437;
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DT   27-SEP-2012 (Rel. 114, Created)
DT   27-SEP-2012 (Rel. 114, Last updated, Version 1)
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DE   Homo sapiens partial HLA-A pseudogene, allele HLA-A*3new, exons 2-4
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KW   .
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RP   1-1026
RA   Bengtsson M.;
RT   ;
RL   Submitted (17-SEP-2012) to the INSDC.
RL   Bengtsson M., Dept of Immunology, Genetics and Patholo, Rudbeck Laboratory,
RL   University Hospital, SE-751 85, Uppsala, SWEDEN.
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RN   [2]
RA   Bengtsson M.;
RT   "A new non expressed HLA A3 allele";
RL   Unpublished.
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DR   MD5; aa6e167a4bd51c1066ad541ed4c77c11.
DR   IMGT/HLA; A*03:162N; HLA08882.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1026
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   CDS             join(<1..270,371..646,747..>1026)
FT                   /codon_start=3
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*3new"
FT                   /note="insertion in exon 4 causes a stop codon"
FT                   /pseudogene="allelic"
FT   exon            1..270
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*3new"
FT                   /number=2
FT   gap             271..370
FT                   /estimated_length=unknown
FT   exon            371..646
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*3new"
FT                   /number=3
FT   gap             647..746
FT                   /estimated_length=unknown
FT   exon            747..1026
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*3new"
FT                   /number=4
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SQ   Sequence 1026 BP; 169 A; 249 C; 286 G; 122 T; 200 other;
     gctcccactc catgaggtat ttcttcacat ccgtgtcccg gcccggccgc ggggagcccc        60
     gcttcatcgc cgtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg       120
     cgagccagag gatggagccg cgggcgccgt ggatagagca ggaggggccg gagtattggg       180
     accaggagac acggaatgtg aaggcccagt cacagactga ccgagtggac ctggggaccc       240
     tgcgcggcta ctacaaccag agcgaggccg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       360
     nnnnnnnnnn gttctcacac catccagata atgtatggct gcgacgtggg gtcggacggg       420
     cgcttcctcc gcgggtaccg gcaggacgcc tacgacggca aggattacat cgccctgaac       480
     gaggacctgc gctcttggac cgcggcggac atggcggctc agatcaccaa gcgcaagtgg       540
     gaggcggccc atgaggcgga gcagttgaga gcctacctgg atggcacgtg cgtggagtgg       600
     ctccgcagat acctggagaa cgggaaggag acgctgcagc gcacggnnnn nnnnnnnnnn       660
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       720
     nnnnnnnnnn nnnnnnnnnn nnnnnnaccc ccccaagaca catatgaccc accaccccat       780
     ctctgaccat gcatgaggcc accctgaggt gctgggccct gggcttctac cctgcggaga       840
     tcacactgac ctggcagcgg gatggggagg accagaccca ggacacggag ctcgtggaga       900
     ccaggcctgc aggggatgga accttccaga agtgggcggc tgtggtggtg ccttctggag       960
     aggagcagag atacacctgc catgtgcagc atgagggtct gcccaagccc ctcaccctga      1020
     gatggg                                                                 1026
//