Dbfetch
ID HE858528; SV 1; linear; genomic DNA; STD; HUM; 3086 BP. XX AC HE858528; XX DT 13-JUN-2012 (Rel. 113, Created) DT 25-APR-2014 (Rel. 120, Last updated, Version 2) XX DE Homo sapiens HLA-C gene for HLA-C alpha-chain, allele HLA-C*04-PM57, exons DE 1-8 XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3086 RA Vilches C.; RT ; RL Submitted (07-JUN-2012) to the INSDC. RL Vilches C., H.U. Puerta de Hierro, Immunogenetics-HLA lab, Manuel de Falla RL 1, 28222, SPAIN. XX RN [2] RX DOI; 10.1111/tan.12192. RX PUBMED; 24033148. RA Cisneros E., Martinez-Pomar N., Vilches M., Martin P., de Pablo R., RA Nunez Del Prado N., Nieto A., Matamoros N., Moraru M., Vilches C.; RT "Advancing allele group-specific amplification of the complete HLA-C RT gene--isolation of novel alleles from three allele groups (C*04, C*07 and RT C*08)"; RL Tissue Antigens 82(4):280-285(2013). XX DR MD5; e6d5cc6672b9d7e2050ce659e5ed35b6. DR IMGT/HLA; HLA-C*04:128; HLA08413. XX FH Key Location/Qualifiers FH FT source 1..3086 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT mRNA join(<1..93,224..493,740..1015,1603..1878,2000..2119, FT 2559..2591,2699..2746,2911..>3086) FT /gene="HLA-C" FT /allele="HLA-C*04-PM57" FT exon <1..93 FT /gene="HLA-C" FT /allele="HLA-C*04-PM57" FT /number=1 FT CDS join(21..93,224..493,740..1015,1603..1878,2000..2119, FT 2559..2591,2699..2746,2911..2915) FT /gene="HLA-C" FT /allele="HLA-C*04-PM57" FT /product="HLA-C alpha-chain" FT /db_xref="GOA:I4IY68" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:I4IY68" FT /protein_id="CCI61549.1" FT /translation="MRVMAPRTLILLLSGALALTETWAGSHSMRYFSTSVSWPGRGEPR FT FIAVGYVDDTQFVRFDSDAASPRGEPREPWVEQEGPECWDRETQKYKRQAQADRVNLRK FT LRGYYNQSEDGSHTLQRMFGCDLGPDGRLLRGYNQFAYDGKDYIALNEDLRSWTAADTA FT AQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE FT ATLRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPEPLTLRWKPSSQPTIPIVGIVAGLAVLAVLAVLGAMVAVVMCRRKSSGG FT KGGSCSQAASSNSAQGSDESLIACKA" FT sig_peptide 21..92 FT /gene="HLA-C" FT /allele="HLA-C*04-PM57" FT mat_peptide join(93..93,224..493,740..1015,1603..1878,2000..2119, FT 2559..2591,2699..2746,2911..2912) FT /gene="HLA-C" FT /allele="HLA-C*04-PM57" FT /product="HLA-C alpha-chain" FT intron 94..223 FT /gene="HLA-C" FT /allele="HLA-C*04-PM57" FT /number=1 FT exon 224..493 FT /gene="HLA-C" FT /allele="HLA-C*04-PM57" FT /number=2 FT intron 494..739 FT /gene="HLA-C" FT /allele="HLA-C*04-PM57" FT /number=2 FT exon 740..1015 FT /gene="HLA-C" FT /allele="HLA-C*04-PM57" FT /number=3 FT intron 1016..1602 FT /gene="HLA-C" FT /allele="HLA-C*04-PM57" FT /number=3 FT exon 1603..1878 FT /gene="HLA-C" FT /allele="HLA-C*04-PM57" FT /number=4 FT intron 1879..1999 FT /gene="HLA-C" FT /allele="HLA-C*04-PM57" FT /number=4 FT exon 2000..2119 FT /gene="HLA-C" FT /allele="HLA-C*04-PM57" FT /number=5 FT intron 2120..2558 FT /gene="HLA-C" FT /allele="HLA-C*04-PM57" FT /number=5 FT exon 2559..2591 FT /gene="HLA-C" FT /allele="HLA-C*04-PM57" FT /number=6 FT intron 2592..2698 FT /gene="HLA-C" FT /allele="HLA-C*04-PM57" FT /number=6 FT exon 2699..2746 FT /gene="HLA-C" FT /allele="HLA-C*04-PM57" FT /number=7 FT intron 2747..2910 FT /gene="HLA-C" FT /allele="HLA-C*04-PM57" FT /number=7 FT exon 2911..>3086 FT /gene="HLA-C" FT /allele="HLA-C*04-PM57" FT /number=8 XX SQ Sequence 3086 BP; 583 A; 882 C; 978 G; 643 T; 0 other; gattctcccc agacgccgag atgcgggtca tggcgccccg aaccctcatc ctgctgctct 60 cgggagccct ggccctgacc gagacctggg ccggtgagtg cggggttggg agggaaacgg 120 cctctgggga gaggagcgag gggcccgccc ggcgagggcg caggacccgg ggagccgcgc 180 agggaggagg gtcgggcggg tctcagccac tcctcgtccc caggctccca ctccatgagg 240 tatttctcca catccgtgtc ctggcccggc cgcggggagc cccgcttcat cgcagtgggc 300 tacgtggacg acacgcagtt cgtgcggttc gacagcgacg ccgcgagtcc aagaggggag 360 ccgcgggagc cgtgggtgga gcaggagggg ccggagtgtt gggaccggga gacacagaag 420 tacaagcgcc aggcacaggc tgaccgagtg aacctgcgga aactgcgcgg ctactacaac 480 cagagcgagg acggtgagtg accccggccc ggggcgcagg tcacgacccc tccccatccc 540 ccacggacgg cccgggtcgc cccgagtctc cccgtctgag atccaccccg aggctgcgga 600 acccgcccag accctcgacc ggagagagcc ccagtcacct ttacccggtt tcattttcag 660 tttaggccaa aatccccgcg ggttggtcgg gactggggcg gggctcgggg gaccgggctg 720 accacggggg cggggccagg gtctcacacc ctccagagga tgtttggctg cgacctgggg 780 ccggacgggc gcctcctccg cgggtataac cagttcgcct acgacggcaa ggattacatc 840 gccctgaacg aggatctgcg ctcctggacc gccgcggaca cggcggctca gatcacccag 900 cgcaagtggg aggcggcccg tgaggcggag cagcggagag cctacctgga gggcacgtgc 960 gtggagtggc tccgcagata cctggagaac gggaaggaga cgctgcagcg cgcgggtacc 1020 aggggcagtg gggagccttc cccatctccc gtagatctcc cgggatggcc tcccacgagg 1080 aggggaggaa aatgggatca gcgctagaat atcgccctcc cttgaatgga gaatgggatg 1140 agttttcctg agtttcctct gagggccccc tctgctctct aggacaatta agggatgaag 1200 tccttgagga aatggagggg aagacagtcc ctggaatact gatcaggggt cccctttgac 1260 cactttgacc actgcagcag ctgtggtcag gctgctgacc tttctctcag gccttgttct 1320 ctgcctgacg ctcaatgtgt ttgaaggttt gattccagct tttctgagtc cttcggcctc 1380 cactcaggtc aggaccagaa gtcgctgttc ctccctcaga gactagaact ttccaatgaa 1440 taggagatta tcccaggtgc ctgtgtccag gctggcgtct gggttctgtg cccccttccc 1500 caccccaggt gtcctgtcca ttctcaggat ggtcacatgg gcgctgttgg agtgtcgcaa 1560 gagagataca aagtgtctga attttctgac tcttcccatc agaacaccca aagacacacg 1620 tgacccacca tcccgtctct gaccatgagg ccaccctgag gtgctgggcc ctgggcttct 1680 accctgcgga gatcacactg acctggcagt gggatgggga ggaccaaact caggacaccg 1740 agcttgtgga gaccaggcca gcaggagatg gaaccttcca gaagtgggca gctgtggtgg 1800 tgccttctgg agaagagcag agatacacgt gccatgttca gcacgagggg ctgccggagc 1860 ccctcaccct gagatggagt aaggaggggg atgaggggtg atgtgtcttc tcagggaaag 1920 cagaagtcct ggagcccttc agccgggtca gggctgaggc ttggaggtca gggcccctca 1980 ccttcccctc ctttcccaga gccgtcttcc cagcccacca tccccatcgt gggcatcgtt 2040 gctggcctgg ctgtcctggc tgtcctagct gtcctaggag ctatggtggc tgttgtgatg 2100 tgtaggagga agagctcagg tagggaaggg gtgaggagtg gggtctgggt tttcttgttc 2160 cactgggagt ttcaagcccc aggtagaagt gtgccccacc tcgttactgg aagcaccatc 2220 cacacatggg ccatcccagc ctgggaccct gtgtgccagc acttactctg ttgtgaagca 2280 catgacaatg aaggacagat gtatcacctt gatgattatg gtgttggggt ccttgattcc 2340 agcattcatg agtcagggga aggtccctgc taaggacaga ccttaggagg gcagttgctt 2400 cagaacccac agctgctttc cccgtgtttc ctgatcctgc cctgggtctg cagtcatagt 2460 tctggaaact tctcttgggt ccaagactag gaggttcccc taagatcgca tggccctgcc 2520 tcctccctgt cccctcacag ggcattttct tcccacaggt ggaaaaggag ggagctgctc 2580 tcaggctgcg tgtaagtgat ggcggtgggc gtgtggagga gctcacccac cccataattc 2640 ctcttgtccc acatctcctg cgggctctga ccaggtcttt ttttttgttc taccccagcc 2700 agcaacagtg cccagggctc tgatgagtct ctcatcgctt gtaaaggtga gattctgggg 2760 agctgaagtg gtcgggggtg gggcagaggg aaaaggccta ggtaatgggg atcctttgat 2820 tgggacgttt cgaatgtgtg gtgagctgtt cagagtgtca tcacttacca tgactgacct 2880 gaatttgttc atgactattg tgttctgtag cctgagacag ctgcctgtgt gggactgaga 2940 tgcaggattt cttcacacct ctcctttgtg acttcaagag cctctggcat ctctttctgc 3000 aaaggcatct gaatgtgtct gcgttcctgt tagcataatg tgaggaggtg gagagacagc 3060 ccacccccgt gtccaccgtg acccct 3086 //