Dbfetch
ID GU809990; SV 1; linear; genomic DNA; STD; HUM; 1654 BP.
XX
AC GU809990;
XX
DT 21-APR-2010 (Rel. 104, Created)
DT 19-JAN-2011 (Rel. 107, Last updated, Version 2)
XX
DE Homo sapiens MHC class I antigen (HLA-Cw) gene, HLA-Cw*03 variant allele,
DE partial cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-1654
RX DOI; 10.1111/j.1399-0039.2010.01555.x.
RX PUBMED; 20727113.
RA Shen M., Chan S.H., Ren E.C.;
RT "Identification of a novel HLA-C allele, HLA-C*03:85, in a Singaporean
RT Chinese";
RL Tissue Antigens 77(1):83-84(2011).
XX
RN [2]
RP 1-1654
RA Shen M., Chan S.H., Ren E.C.;
RT ;
RL Submitted (17-FEB-2010) to the INSDC.
RL Yong Loo Lin School of Medicine, National University of Singapore,
RL Immunology Centre, 5 Science Drive 2, MD4, Level 5, Singapore 117597,
RL Singapore
XX
DR MD5; 161d75416781dee5f3582bea7a815232.
DR IMGT/HLA; HLA-C*03:85; HLA05111.
XX
FH Key Location/Qualifiers
FH
FT source 1..1654
FT /organism="Homo sapiens"
FT /chromosome="6"
FT /map="6p21.3"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene <1..>1654
FT /gene="HLA-Cw"
FT /allele="HLA-Cw*03 variant"
FT mRNA join(<1..270,517..792,1379..>1654)
FT /gene="HLA-Cw"
FT /allele="HLA-Cw*03 variant"
FT /product="MHC class I antigen"
FT CDS join(<1..270,517..792,1379..>1654)
FT /codon_start=3
FT /gene="HLA-Cw"
FT /allele="HLA-Cw*03 variant"
FT /product="MHC class I antigen"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:D5L7X0"
FT /protein_id="ADE59301.1"
FT /translation="SHSMRYFYTAVSRPGRGEPHFIAVGYVDDTQFVRFDSDAASPRGE
FT PRAPWVEQEGPEYWDRETQKYNRQAQTDRVSLRNLRGYYNQSEARSHIIQRMYGCDVGP
FT DGRLLRGYDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQLRAYLEGLC
FT VEWLRRYLKNGKETLQRAEHPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQWDGED
FT QTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRW"
FT gap 271..516
FT /estimated_length=246
FT gap 793..1378
FT /estimated_length=586
XX
SQ Sequence 1654 BP; 172 A; 246 C; 287 G; 117 T; 832 other;
gctcccactc catgaggtat ttctacaccg ctgtgtcccg gcccggccgc ggggagcccc 60
acttcatcgc agtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg 120
cgagtccgag aggggagccg cgggcgccgt gggtggagca ggaggggccg gagtattggg 180
accgggagac acagaagtac aaccgccagg cacagactga ccgagtgagc ctgcggaacc 240
tgcgcggcta ctacaaccag agcgaggcca nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 300
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 360
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 420
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 480
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnggtc tcacatcatc cagaggatgt 540
atggctgcga cgtggggccc gacgggcgcc tcctccgcgg gtatgaccag tacgcctacg 600
acggcaagga ttacatcgcc ctgaacgagg atctgcgctc ctggaccgcc gcggacacgg 660
cggctcagat cacccagcgc aagtgggagg cggcccgtga ggcggagcag ctgagagcct 720
acctggaggg cctgtgcgtg gagtggctcc gcagatacct gaagaatggg aaggagacgc 780
tgcagcgcgc ggnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 840
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 900
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 960
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1020
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1080
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1140
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1200
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1260
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1320
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnaa 1380
cacccaaaga cacacgtgac ccaccatccc gtctctgacc atgaggccac cctgaggtgc 1440
tgggccctgg gcttctaccc tgcggagatc acactgacct ggcagtggga tggggaggac 1500
caaactcagg acactgagct tgtggagacc aggccagcag gagatggaac cttccagaag 1560
tgggcagctg tggtggtgcc ttctggagaa gagcagagat acacgtgcca tgtgcagcac 1620
gaggggctgc cggagcccct caccctgaga tggg 1654
//