Dbfetch
ID GQ985505; SV 1; linear; genomic DNA; STD; HUM; 2623 BP.
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AC GQ985505;
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DT 19-OCT-2009 (Rel. 102, Created)
DT 19-OCT-2009 (Rel. 102, Last updated, Version 1)
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DE Homo sapiens MHC class I antigen (HLA-Cw) gene, HLA-Cw-Cw*04010101 variant
DE allele, exons 2 through 7 and partial cds.
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KW .
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OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
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RN [1]
RP 1-2623
RA Lazaro A.M., Xiao Y., Masaberg C., Hurley C.K.;
RT "Novel HLA class allele";
RL Unpublished.
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RN [2]
RP 1-2623
RA Lazaro A.M., Xiao Y., Masaberg C., Hurley C.K.;
RT ;
RL Submitted (22-SEP-2009) to the INSDC.
RL Oncology, Georgetown University, 3970 Reservoir Rd, N.W., Washington, DC
RL 20057, USA
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DR MD5; d00e0dcfe858722bf0d1347a044c9d2d.
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FH Key Location/Qualifiers
FH
FT source 1..2623
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene <1..>2623
FT /gene="HLA-Cw"
FT /allele="Cw*04010101 variant"
FT mRNA join(<1..270,517..792,1480..1755,1877..1996,2436..2468,
FT 2576..>2623)
FT /gene="HLA-Cw"
FT /allele="Cw*04010101 variant"
FT /product="MHC class I antigen"
FT CDS join(<1..270,517..792,1480..1755,1877..1996,2436..2468,
FT 2576..>2623)
FT /codon_start=3
FT /gene="HLA-Cw"
FT /allele="Cw*04010101 variant"
FT /product="MHC class I antigen"
FT /db_xref="GOA:D0F1S2"
FT /db_xref="IMGT/HLA:C*04:01:11"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR010579"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:D0F1S2"
FT /protein_id="ACX56224.1"
FT /translation="SHSMRYFSTSVSWPGRGEPRFIAVGYVDDTQFVRFDSDAASPRGE
FT PREPWVEQEGPEYWDRETQKYKRQAQADRVNLRKLRGYYNQSEDGSHTLQRMFGCDLGP
FT DGRLLRGYNQFAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGTC
FT VEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQWDGED
FT QTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWKPSSQPTI
FT PIVGIVAGLAVLAVLAVLGAMVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDESLIACK
FT "
FT exon 1..270
FT /gene="HLA-Cw"
FT /allele="Cw*04010101 variant"
FT /number=2
FT gap 271..516
FT /estimated_length=246
FT exon 517..792
FT /gene="HLA-Cw"
FT /allele="Cw*04010101 variant"
FT /number=3
FT gap 793..1479
FT /estimated_length=687
FT exon 1480..1755
FT /gene="HLA-Cw"
FT /allele="Cw*04010101 variant"
FT /number=4
FT gap 1756..1876
FT /estimated_length=121
FT exon 1877..1996
FT /gene="HLA-Cw"
FT /allele="Cw*04010101 variant"
FT /number=5
FT gap 1997..2435
FT /estimated_length=439
FT exon 2436..2468
FT /gene="HLA-Cw"
FT /allele="Cw*04010101 variant"
FT /number=6
FT gap 2469..2575
FT /estimated_length=107
FT exon 2576..2623
FT /gene="HLA-Cw"
FT /allele="Cw*04010101 variant"
FT /number=7
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SQ Sequence 2623 BP; 208 A; 299 C; 351 G; 165 T; 1600 other;
gctcccactc catgaggtat ttctccacat ccgtgtcctg gcctggccgc ggggagcccc 60
gcttcatcgc agtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg 120
cgagtccaag aggggagccg cgggagccgt gggtggagca ggaggggccg gagtattggg 180
accgggagac acagaagtac aagcgccagg cacaggctga ccgagtgaac ctgcggaaac 240
tgcgcggcta ctacaaccag agcgaggacg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 300
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 360
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 420
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 480
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnggtc tcacaccctc cagaggatgt 540
ttggctgcga cctggggccg gacgggcgcc tcctccgcgg gtataaccag ttcgcctacg 600
acggcaagga ttacatcgcc ctgaacgagg atctgcgctc ctggaccgcc gcggacacgg 660
cggctcagat cacccagcgc aagtgggagg cggcccgtga ggcggagcag cggagagcct 720
acctggaggg cacgtgcgtg gagtggctcc gcagatacct ggagaacggg aaggagacgc 780
tgcagcgcgc ggnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 840
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 900
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 960
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1020
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1080
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1140
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1200
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1260
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1320
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1380
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1440
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnna acacccaaag acacacgtga 1500
cccaccatcc cgtctctgac catgaggcca ccctgaggtg ctgggccctg ggcttctacc 1560
ctgcggagat cacactgacc tggcagtggg atggggagga ccaaactcag gacaccgagc 1620
ttgtggagac caggccagca ggagatggaa ccttccagaa gtgggcagct gtggtggtgc 1680
cttctggaga agagcagaga tacacgtgcc atgttcagca cgaggggctg ccggagcccc 1740
tcaccctgag atggannnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1800
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1860
nnnnnnnnnn nnnnnnagcc gtcttcccag cccaccatcc ccatcgtggg catcgttgct 1920
ggcctggctg tcctggctgt cctagctgtc ctaggagcta tggtggctgt tgtgatgtgt 1980
aggaggaaga gctcagnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2040
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2100
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2160
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2220
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2280
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2340
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2400
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnngtgga aaaggaggga gctgctctca 2460
ggctgcgtnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2520
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnccagc 2580
aacagtgccc agggctctga tgagtctctc atcgcttgta aag 2623
//
