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EBI Dbfetch

ID   GQ325308; SV 1; linear; genomic DNA; STD; HUM; 1669 BP.
XX
AC   GQ325308;
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DT   28-JUL-2009 (Rel. 101, Created)
DT   28-JUL-2009 (Rel. 101, Last updated, Version 1)
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DE   Homo sapiens MHC class I antigen (HLA-Cw) gene, HLA-Cw*050101v allele,
DE   exons 2 through 4 and partial cds.
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KW   .
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-1669
RA   Cao K., Wang Q., Semendyayeva M., Naim M., Lai C.-H., Ong G.,
RA   Reinsmoen N.L.;
RT   "A Novel Allele of Cw*050101 Variant Identified by Sequence-based Typing";
RL   Unpublished.
XX
RN   [2]
RP   1-1669
RA   Cao K., Wang Q., Semendyayeva M., Naim M., Lai C.-H., Ong G.,
RA   Reinsmoen N.L.;
RT   ;
RL   Submitted (24-JUN-2009) to the INSDC.
RL   HLA Laboratory, Comprehensive Transplant Center, Cedars-Sinai Medical
RL   Center, 8723 Alden Dr. SSB-197, Los Angeles, CA 90048, USA
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DR   MD5; 8b5b8d28a34ad0b69f9cf9739df0ff13.
DR   Ensembl-Gn; ENSG00000206435; homo_sapiens.
DR   Ensembl-Gn; ENSG00000206452; homo_sapiens.
DR   Ensembl-Tr; ENST00000383323; homo_sapiens.
DR   Ensembl-Tr; ENST00000383483; homo_sapiens.
DR   Ensembl-Tr; ENST00000383487; homo_sapiens.
DR   Ensembl-Tr; ENST00000400341; homo_sapiens.
DR   Ensembl-Tr; ENST00000400394; homo_sapiens.
DR   Ensembl-Tr; ENST00000400395; homo_sapiens.
DR   Ensembl-Tr; ENST00000434884; homo_sapiens.
DR   Ensembl-Tr; ENST00000458668; homo_sapiens.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1669
FT                   /organism="Homo sapiens"
FT                   /isolate="CS00021"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gene            <1..>1669
FT                   /gene="HLA-Cw"
FT                   /allele="HLA-Cw*050101v"
FT   mRNA            join(<1..270,517..792,1394..>1669)
FT                   /gene="HLA-Cw"
FT                   /allele="HLA-Cw*050101v"
FT                   /product="HLA-Cw"
FT   CDS             join(<1..270,517..792,1394..>1669)
FT                   /codon_start=3
FT                   /gene="HLA-Cw"
FT                   /allele="HLA-Cw*050101v"
FT                   /product="MHC class I antigen"
FT                   /db_xref="GOA:C7EY82"
FT                   /db_xref="IMGT/HLA:C*05:01:05"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR027648"
FT                   /db_xref="UniProtKB/TrEMBL:C7EY82"
FT                   /protein_id="ACT75329.1"
FT                   /translation="SHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVQFDSDAASPRGE
FT                   PRAPWVEQEGPEYWDRETQKYKRQAQTDRVNLRKLRGYYNQSEAGSHTLQRMYGCDLGP
FT                   DGRLLRGYNQFAYDGKDYIALNEDLRSWTAADKAAQITQRKWEAAREAEQRRAYLEGTC
FT                   VEWLRRYLENGKKTLQRAEHPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQRDGED
FT                   QTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRW"
FT   exon            <1..270
FT                   /gene="HLA-Cw"
FT                   /allele="HLA-Cw*050101v"
FT                   /number=2
FT   gap             271..516
FT                   /estimated_length=246
FT   exon            517..792
FT                   /gene="HLA-Cw"
FT                   /allele="HLA-Cw*050101v"
FT                   /number=3
FT   gap             793..1393
FT                   /estimated_length=601
FT   exon            1394..>1669
FT                   /gene="HLA-Cw"
FT                   /allele="HLA-Cw*050101v"
FT                   /number=4
XX
SQ   Sequence 1669 BP; 178 A; 251 C; 282 G; 111 T; 847 other;
     gctcccactc catgaggtat ttctacaccg ccgtgtcccg gcccggccgc ggagagcccc        60
     gcttcatcgc agtgggctac gtggacgaca cgcagttcgt gcagttcgac agcgacgccg       120
     cgagtccaag aggggagccg cgggcgccgt gggtggagca ggaggggccg gagtattggg       180
     accgggagac acagaagtac aagcgccagg cacagactga ccgagtgaac ctgcggaaac       240
     tgcgcggcta ctacaaccag agcgaggccg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       360
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       420
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       480
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnggtc tcacaccctc cagaggatgt       540
     atggctgcga cctggggccc gacgggcgcc tcctccgcgg gtataaccag ttcgcctacg       600
     acggcaagga ttacatcgcc ctgaatgagg acctgcgctc ctggaccgcc gcggacaagg       660
     cggctcagat cacccagcgc aagtgggagg cggcccgtga ggcggagcag cggagagcct       720
     acctggaggg cacgtgcgtg gagtggctcc gcagatacct ggagaacggg aagaagacgc       780
     tgcagcgcgc ggnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       840
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       900
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       960
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1020
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1080
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1140
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1320
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1380
     nnnnnnnnnn nnnaacaccc aaagacacac gtgacccacc atcccgtctc tgaccatgag      1440
     gccaccctga ggtgctgggc cctgggcttc taccctgcgg agatcacact gacctggcag      1500
     cgggatggcg aggaccaaac tcaggacacc gagcttgtgg agaccaggcc agcaggagat      1560
     ggaaccttcc agaagtgggc agctgtggtg gtgccttctg gagaagagca gagatacaca      1620
     tgccatgtgc agcacgaggg gctgccagag cccctcaccc tgagatggg                  1669
//


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