Dbfetch

Dbfetch

ID   FR871131; SV 1; linear; genomic DNA; STD; HUM; 1412 BP.
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AC   FR871131;
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DT   31-MAY-2011 (Rel. 109, Created)
DT   25-SEP-2014 (Rel. 122, Last updated, Version 3)
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DE   Homo sapiens partial HLA-A gene for MHC class I antigen, allele A*24:02:80,
DE   exons 1-5, isolate D10112875
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KW   .
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RP   1-1412
RA   Qu J.;
RT   ;
RL   Submitted (25-APR-2011) to the INSDC.
RL   Qu J., HealthCare Dep., Bei Shan Industrial Zone, Beishan Industrial Zone,
RL   Yantian District, Shenzh, 518083, CHINA.
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RN   [2]
RA   Qu J., Li J., Chen H., Huang C., Zheng Z., Shen M., Cheng Z., Zhang H.,
RA   Tian Z., Tang J., Zeng H., Chen G., Wang L., Liao K., Li F., Qian P.,
RA   Tian C., Wang Y., Zhen H., Hua S., Deng X., Yang H., Wang N., Yin J.,
RA   Hu Z., Zhang M., Cao H., Zhang W., Wang W., Yang L., Liu G., Wang J.,
RA   Yang H.;
RT   "Characterization of 700 novel alleles at the HLA-A, -B, C,DQB1,and -DRB1
RT   loci from Chinese Marrow Donor Program volunteer donors";
RL   Unpublished.
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DR   MD5; fd71658189bdd7198b99632609264899.
DR   IMGT/HLA; HLA-A*24:02:80; HLA10832.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1412
FT                   /organism="Homo sapiens"
FT                   /isolate="D10112875"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   CDS             join(1..73,174..443,544..819,920..1195,1296..>1412)
FT                   /transl_table=1
FT                   /gene="HLA-A"
FT                   /allele="A*24:02:80"
FT                   /product="MHC class I antigen"
FT                   /function="antigen presenting molecule"
FT                   /db_xref="GOA:F6IR19"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="InterPro:IPR037055"
FT                   /db_xref="UniProtKB/TrEMBL:F6IR19"
FT                   /protein_id="CCB78943.1"
FT                   /translation="MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFSTSVSRPGRGEPR
FT                   FIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDEETGKVKAHSQTDRENLRI
FT                   ALRYYNQSEAGSHTLQMMFGCDVGSDGRFLRGYHQYAYDGKDYIALKEDLRSWTAADMA
FT                   AQITKRKWEAAHVAEQQRAYLEGTCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHE
FT                   ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY
FT                   TCHVQHEGLPKPLTLRWEPSSQPTVPIVGIIAGLVLLGAVITGAVVAAVMWRRNSS"
FT   exon            1..73
FT                   /gene="HLA-A"
FT                   /allele="A*24:02:80"
FT                   /number=1
FT   gap             74..173
FT                   /estimated_length=unknown
FT   exon            174..443
FT                   /gene="HLA-A"
FT                   /allele="A*24:02:80"
FT                   /number=2
FT   gap             444..543
FT                   /estimated_length=unknown
FT   exon            544..819
FT                   /gene="HLA-A"
FT                   /allele="A*24:02:80"
FT                   /number=3
FT   gap             820..919
FT                   /estimated_length=unknown
FT   exon            920..1195
FT                   /gene="HLA-A"
FT                   /allele="A*24:02:80"
FT                   /number=4
FT   gap             1196..1295
FT                   /estimated_length=unknown
FT   exon            1296..>1412
FT                   /gene="HLA-A"
FT                   /allele="A*24:02:80"
FT                   /number=5
XX
SQ   Sequence 1412 BP; 201 A; 314 C; 336 G; 161 T; 400 other;
     atggccgtca tggcgccccg aaccctcgtc ctgctactct cgggggccct ggccctgacc        60
     cagacctggg cagnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       120
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnngctccca       180
     ctccatgagg tatttctcca catccgtgtc ccggcccggc cgcggggagc cccgcttcat       240
     cgccgtgggc tacgtggacg acacgcagtt cgtgcggttc gacagcgacg ccgcgagcca       300
     gaggatggag ccgcgggcgc cgtggataga gcaggagggg ccggagtatt gggacgagga       360
     gacagggaaa gtgaaggccc actcacagac tgaccgagag aacctgcgga tcgcgctccg       420
     ctactacaac cagagcgagg ccgnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       480
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       540
     nnngttctca caccctccag atgatgtttg gctgcgacgt ggggtcggac gggcgcttcc       600
     tccgcgggta ccaccagtac gcctacgacg gcaaggatta catcgccctg aaagaggacc       660
     tgcgctcttg gaccgcggcg gacatggcgg ctcagatcac caagcgcaag tgggaggcgg       720
     cccatgtggc ggagcagcag agagcctacc tggagggcac gtgcgtggac gggctccgca       780
     gatacctgga gaacgggaag gagacgctgc agcgcacggn nnnnnnnnnn nnnnnnnnnn       840
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       900
     nnnnnnnnnn nnnnnnnnna cccccccaag acacatatga cccaccaccc catctctgac       960
     catgaggcca ctctgagatg ctgggccctg ggcttctacc ctgcggagat cacactgacc      1020
     tggcagcggg atggggagga ccagacccag gacacagagc ttgtggagac caggcctgca      1080
     ggggatggaa ccttccagaa gtgggcagct gtggtggtac cttctggaga ggagcagaga      1140
     tacacctgcc atgtgcagca tgagggtctg cccaagcccc tcaccctgag atgggnnnnn      1200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnagcca tcttcccagc ccaccgtccc      1320
     catcgtgggc atcattgctg gcctggttct ccttggagct gtgatcactg gagctgtggt      1380
     cgctgctgtg atgtggagga ggaacagctc ag                                    1412
//