Dbfetch

Dbfetch

ID   FR871031; SV 1; linear; genomic DNA; STD; HUM; 1412 BP.
XX
AC   FR871031;
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DT   31-MAY-2011 (Rel. 109, Created)
DT   25-SEP-2014 (Rel. 122, Last updated, Version 3)
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DE   Homo sapiens partial HLA-A gene for MHC class I antigen, allele
DE   A*02:01:102, exons 1-5, isolate D10067320
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KW   .
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RP   1-1412
RA   Qu J.;
RT   ;
RL   Submitted (25-APR-2011) to the INSDC.
RL   Qu J., HealthCare Dep., Bei Shan Industrial Zone, Beishan Industrial Zone,
RL   Yantian District, Shenzh, 518083, CHINA.
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RN   [2]
RA   Qu J., Li J., Chen H., Huang C., Zheng Z., Shen M., Cheng Z., Zhang H.,
RA   Tian Z., Tang J., Zeng H., Chen G., Wang L., Liao K., Li F., Qian P.,
RA   Tian C., Wang Y., Zhen H., Hua S., Deng X., Yang H., Wang N., Yin J.,
RA   Hu Z., Zhang M., Cao H., Zhang W., Wang W., Yang L., Liu G., Wang J.,
RA   Yang H.;
RT   "Characterization of 700 novel alleles at the HLA-A, -B, C,DQB1,and -DRB1
RT   loci from Chinese Marrow Donor Program volunteer donors";
RL   Unpublished.
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DR   MD5; dc6700ee84af3e3a660a910bf62b303f.
DR   IMGT/HLA; HLA-A*02:01:102; HLA10780.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1412
FT                   /organism="Homo sapiens"
FT                   /isolate="D10067320"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   CDS             join(1..73,174..443,544..819,920..1195,1296..>1412)
FT                   /transl_table=1
FT                   /gene="HLA-A"
FT                   /allele="A*02:01:102"
FT                   /product="MHC class I antigen"
FT                   /function="antigen presenting molecule"
FT                   /db_xref="GOA:F6IQS2"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="InterPro:IPR037055"
FT                   /db_xref="UniProtKB/TrEMBL:F6IQS2"
FT                   /protein_id="CCB78843.1"
FT                   /translation="MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPR
FT                   FIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGT
FT                   LRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMA
FT                   AQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHE
FT                   ATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRY
FT                   TCHVQHEGLPKPLTLRWEPSSQPTIPIVGIIAGLVLFGAVITGAVVAAVMWRRKSS"
FT   exon            1..73
FT                   /gene="HLA-A"
FT                   /allele="A*02:01:102"
FT                   /number=1
FT   gap             74..173
FT                   /estimated_length=unknown
FT   exon            174..443
FT                   /gene="HLA-A"
FT                   /allele="A*02:01:102"
FT                   /number=2
FT   gap             444..543
FT                   /estimated_length=unknown
FT   exon            544..819
FT                   /gene="HLA-A"
FT                   /allele="A*02:01:102"
FT                   /number=3
FT   gap             820..919
FT                   /estimated_length=unknown
FT   exon            920..1195
FT                   /gene="HLA-A"
FT                   /allele="A*02:01:102"
FT                   /number=4
FT   gap             1196..1295
FT                   /estimated_length=unknown
FT   exon            1296..>1412
FT                   /gene="HLA-A"
FT                   /allele="A*02:01:102"
FT                   /number=5
XX
SQ   Sequence 1412 BP; 197 A; 304 C; 343 G; 168 T; 400 other;
     atggccgtca tggcgccccg aaccctcgtc ctgctactct cgggggctct ggccctgacc        60
     cagacctggg cggnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       120
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnngctctca       180
     ctccatgagg tatttcttca catcggtgtc ccggcccggc cgcggggagc cccgcttcat       240
     cgcagtgggc tacgtggacg acacgcagtt cgtgcggttc gacagcgacg ccgcgagcca       300
     gaggatggag ccgcgggcgc cgtggataga gcaggagggt ccggagtatt gggacgggga       360
     gacacggaaa gtgaaggccc actcacagac tcaccgagtg gacctgggga ccctgcgcgg       420
     ctactacaac cagagcgagg ccgnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       480
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       540
     nnngttctca caccgtccag aggatgtatg gctgcgacgt ggggtcggac tggcgcttcc       600
     tccgcgggta ccaccagtac gcctacgacg gcaaggatta catcgccctg aaagaggacc       660
     tgcgctcttg gaccgcggcg gacatggcag ctcagaccac caagcacaag tgggaggcgg       720
     cccatgtggc ggagcagttg agagcctacc tggagggcac gtgcgtggag tggctccgca       780
     gatacctgga gaacgggaag gagacgctgc agcgcacggn nnnnnnnnnn nnnnnnnnnn       840
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       900
     nnnnnnnnnn nnnnnnnnna cgcccccaaa acgcatatga ctcaccacgc tgtctctgac       960
     catgaagcca ccctgaggtg ctgggccctg agcttctacc ctgcggagat cacactgacc      1020
     tggcagcggg atggggagga ccagacccag gacacggagc tcgtggagac caggcctgca      1080
     ggggatggaa ccttccagaa gtgggcggct gtggtggtgc cttctggaca ggagcagaga      1140
     tacacctgcc atgtgcagca tgagggtttg cccaagcccc tcaccctgag atgggnnnnn      1200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnagccg tcttcccagc ccaccatccc      1320
     catcgtgggc atcattgctg gcctggttct ctttggagct gtgatcactg gagctgtggt      1380
     cgctgctgtg atgtggagga ggaagagctc ag                                    1412
//