Dbfetch
ID FR716504; SV 1; linear; genomic DNA; STD; HUM; 2281 BP. XX AC FR716504; XX DT 28-OCT-2010 (Rel. 106, Created) DT 28-OCT-2010 (Rel. 106, Last updated, Version 1) XX DE Homo sapiens partial HLA-C gene for MHC class I antigen, allele DE HLA-C*07New, exons 1-7 XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-2281 RA Tourne S.; RT ; RL Submitted (23-OCT-2010) to the INSDC. RL Tourne S., Laboratoire d Histocompatibilite, EFS Alsace, 10 rue Spielmann, RL 67065 Strasbourg Cedex, FRANCE. XX RN [2] RA Weschler B., Bert S., Leisenbach R., Schell A., Froelich N., Tourne S., RA Hanau D.; RT "The new HLA-C*07 allele has a nucleotide change from HLA-C*07:01 alleles RT (a C to T ) at position 477 (exon 3), which is silent"; RL Unpublished. XX DR MD5; 9af1ea90ee37d57483e5bd99fa645ba6. DR IMGT/HLA; HLA-C*07:01:27; HLA08054. XX FH Key Location/Qualifiers FH FT source 1..2281 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /tissue_type="blood" FT /PCR_primers="fwd_name: GlyG-9 (intron 1), fwd_seq: FT ctgctgctctcgggaggc, rev_name: P3'UT (3'UT), rev_seq: FT aaatcctgcatctcagtccca" FT /db_xref="taxon:9606" FT CDS join(<1..26,157..426,677..952,1142..1417,1542..1655, FT 2093..2125,2234..>2281) FT /codon_start=2 FT /gene="HLA-C" FT /allele="HLA-C*07New" FT /product="MHC class I antigen" FT /function="antigen presenting molecule" FT /db_xref="GOA:E3Q1I0" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:E3Q1I0" FT /protein_id="CBX45566.1" FT /translation="LALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRFD FT SDAASPRGEPRAPWVEQEGPEYWDRETQNYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ FT RMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQ FT LRAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEIT FT LTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLS FT WASQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGWKRRELLSGCGSNSAQGSD FT ESLITCK" FT exon <1..26 FT /gene="HLA-C" FT /allele="HLA-C*07New" FT /number=1 FT intron 27..156 FT /gene="HLA-C" FT /allele="HLA-C*07New" FT /number=1 FT exon 157..426 FT /gene="HLA-C" FT /allele="HLA-C*07New" FT /number=2 FT intron 427..676 FT /gene="HLA-C" FT /allele="HLA-C*07New" FT /number=2 FT exon 677..952 FT /gene="HLA-C" FT /allele="HLA-C*07New" FT /number=3 FT intron 953..1141 FT /gene="HLA-C" FT /allele="HLA-C*07New" FT /number=3 FT gap 977..1076 FT /estimated_length=unknown FT exon 1142..1417 FT /gene="HLA-C" FT /allele="HLA-C*07New" FT /number=4 FT intron 1418..1541 FT /gene="HLA-C" FT /allele="HLA-C*07New" FT /number=4 FT gap 1442..1541 FT /estimated_length=unknown FT exon 1542..1655 FT /gene="HLA-C" FT /allele="HLA-C*07New" FT /number=5 FT intron 1656..2092 FT /gene="HLA-C" FT /allele="HLA-C*07New" FT /number=5 FT exon 2093..2125 FT /gene="HLA-C" FT /allele="HLA-C*07New" FT /number=6 FT intron 2126..2233 FT /gene="HLA-C" FT /allele="HLA-C*07New" FT /number=6 FT exon 2234..>2281 FT /gene="HLA-C" FT /allele="HLA-C*07New" FT /number=7 XX SQ Sequence 2281 BP; 385 A; 627 C; 689 G; 380 T; 200 other; cctggccctg accgagacct gggcctgtga gtgcggggtt gggagggaag cggcctctgc 60 ggagaggagc gaggggcccg cccggcgagg gcgcaggacc cggggagccg cgcagggagg 120 tgggtcgggc gggtctcagc ccctcctcgc ccccaggctc ccactccatg aggtatttcg 180 acaccgccgt gtcccggccc ggccgcggag agccccgctt catctcagtg ggctacgtgg 240 acgacacgca gttcgtgcgg ttcgacagcg acgccgcgag tccgagaggg gagccgcggg 300 cgccgtgggt ggagcaggag gggccggagt attgggaccg ggagacacag aactacaagc 360 gccaggcaca ggctgaccga gtgagcctgc ggaacctgcg cggctactac aaccagagcg 420 aggacggtga gtgaccccgg cccggggcgc aggtcacgac ccctccccat cccccacgga 480 cggcccgggt cgccccgagt ctccccgtct gagatccacc ccaaggtgga tctgcggaac 540 ccgcccagac cctcgaccgg agagagcccc agtcgccttt acccggtttc attttcggtt 600 taggccaaaa tccccgcggg ttggtcgggg cggggcgggg ctcgggggac tgggctgacc 660 gcgggggcgg ggccagggtc tcacaccctc cagaggatgt atggctgcga cctggggccc 720 gacgggcgcc tcctccgcgg gtatgaccag tccgcctacg acggcaagga ttacatcgcc 780 ctgaacgagg acctgcgctc ctggaccgct gcggacaccg cggctcagat cacccagcgc 840 aagttggagg cggcccgtgc ggcggagcag ctgagagcct acctggaggg cacgtgcgtg 900 gagtggctcc gcagatacct ggagaacggg aaggagacgc tgcagcgcgc aggtaccagg 960 ggcagtgggg agccttnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1020 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnntggg 1080 cgctgctgga gtgtcccaag agagatgcaa agtgtctgaa ttttctgact cttcccgtca 1140 gaacccccaa agacacacgt gacccaccac cccctctctg accatgaggc caccctgagg 1200 tgctgggccc tgggcttcta ccctgcggag atcacactga cctggcagcg ggatggggag 1260 gaccagaccc aggacaccga gcttgtggag accaggccag caggagatgg aaccttccag 1320 aagtgggcag ctgtggtggt gccttctgga caagagcaga gatacacgtg ccatatgcag 1380 cacgaggggc tgcaagagcc cctcaccctg agctggggta aggaggggaa tggggggtca 1440 cnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1500 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ncttcccagc ctaccatccc 1560 catcatgggc atcgttgctg gcctggctgt cctggttgtc ctagctgtcc ttggagctgt 1620 ggtcaccgct atgatgtgta ggaggaagag ctcaggtagg gaaggggtga agagcggggt 1680 ctgggttttc ttgtcccact gggagtttca agccccaggt agaagtgtgc cccgccttgt 1740 tactggaagc accatccaca catgggccat cccagcctgg gaccctgtgt gccagcactt 1800 actcttttgt gacacatgtg acaatgaagg acggatgtat caccttgatg attatggtgt 1860 tggggtcctg attccagcat tcatgagtca ggggaaggtc cctgctaagg acagacctta 1920 ggagggcagt tggtccagaa cccacaactg ctttccccat gtttcctgat cctgccctgg 1980 gtctgcagtc gtagttctgg aaacttctct tgggtccaag actaggaggt tcccctaaga 2040 tcacatggcc ctgcctcctc ccagtcccct catagggcat tttcttccca caggtggaaa 2100 aggagggagc tgctctcagg ctgcgtgtaa gtgatggcgg cgggcgtgtg gaggagctca 2160 cctactccat aattcctctt gtcccacatc tcctgcgggc tctgaccagg tctttttttt 2220 tgttctaccc caggcagcaa cagtgcccag ggctctgatg agtctctcat cacttgtaaa 2280 g 2281 //