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EBI Dbfetch

ID   FN908173; SV 2; linear; genomic DNA; STD; HUM; 1705 BP.
XX
AC   FN908173;
XX
DT   10-JUN-2010 (Rel. 105, Created)
DT   21-JUN-2012 (Rel. 113, Last updated, Version 2)
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DE   Homo sapiens HLA-C pseudogene, allele HLA-C*080101v
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RC   revised by [3]
RA   Qu J.;
RT   ;
RL   Submitted (03-JUN-2010) to the INSDC.
RL   Qu J., Bei Shan Industrial Zone, Yantian District, Shenzhen, CHINA.
XX
RN   [2]
RA   Qu J.;
RT   "full length of HLA-C, alleles";
RL   Unpublished.
XX
RN   [3]
RP   1-1705
RA   Qu J.;
RT   ;
RL   Submitted (14-MAY-2012) to the INSDC.
RL   Qu J., Bei Shan Industrial Zone, Yantian District, Shenzhen, CHINA.
XX
DR   MD5; 4e59ae7db545c68eeec2ea166fb45578.
DR   IMGT/HLA; C*08:36N; HLA05416.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1705
FT                   /organism="Homo sapiens"
FT                   /isolate="D10000970"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   CDS             join(1..73,174..447,548..823,924..1199,1300..1419,
FT                   1520..1552,1553..1600,1701..1705)
FT                   /pseudo
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*080101v"
FT   exon            <1..73
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*080101v"
FT                   /number=1
FT   gap             74..173
FT                   /estimated_length=unknown
FT   exon            174..447
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*080101v"
FT                   /number=2
FT   gap             448..547
FT                   /estimated_length=unknown
FT   exon            548..823
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*080101v"
FT                   /number=3
FT   gap             824..923
FT                   /estimated_length=unknown
FT   exon            924..1199
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*080101v"
FT                   /number=4
FT   gap             1200..1299
FT                   /estimated_length=unknown
FT   exon            1300..1419
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*080101v"
FT                   /number=5
FT   gap             1420..1519
FT                   /estimated_length=unknown
FT   exon            1520..1552
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*080101v"
FT                   /number=6
FT   exon            1553..1600
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*080101v"
FT                   /number=7
FT   gap             1601..1700
FT                   /estimated_length=unknown
FT   exon            1701..>1705
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*080101v"
FT                   /number=8
XX
SQ   Sequence 1705 BP; 220 A; 340 C; 371 G; 174 T; 600 other;
     atgcgggtca tggcgccccg aaccctcatc ctgctgctct cgggagccct ggccctgacc        60
     gagacctggg cctnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       120
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnngctccca       180
     ctccatgagg tatttctaca ccgccgtgtc ccggcccggc cgcggagagc cccgcttcat       240
     cgcagtgggc tacgtggacg acacgcagtt cgtgcagttc gacagcgacg ccgcgagtcc       300
     aagaggggag ccgcgggcgc cgtgggtgga gcaggagggg ccggacggag tattgggacc       360
     gggagacaca gaagtacaag cgccaggcac agactgaccg agtgagcctg cggaacctgc       420
     gcggctacta caaccagagc gaggccgnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       480
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       540
     nnnnnnnggt ctcacaccct ccagaggatg tatggctgcg acctggggcc cgacgggcgc       600
     ctcctccgcg ggtataacca gttcgcctac gacggcaagg attacatcgc cctgaatgag       660
     gacctgcgct cctggaccgc cgcggacacg gcggctcaga tcacccagcg caagtgggag       720
     gcggcccgta cggcggagca gctgagagcc tacctggagg gcacgtgcgt ggagtggctc       780
     cgcagatacc tggagaacgg gaagaagacg ctgcagcgcg cggnnnnnnn nnnnnnnnnn       840
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       900
     nnnnnnnnnn nnnnnnnnnn nnnaacaccc aaagacacac gtgacccacc atcccgtctc       960
     tgaccatgag gccaccctga ggtgctgggc cctgggcttc taccctgcgg agatcacact      1020
     gacctggcag cgggatggcg aggaccaaac tcaggacacc gagcttgtgg agaccaggcc      1080
     agcaggagat ggaaccttcc agaagtgggc agctgtggtg gtgccttctg gagaagagca      1140
     gagatacacg tgccatgtgc agcacgaggg gctgccagag cccctcaccc tgagatgggn      1200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnng gccatcttcc cagcccacca      1320
     tccccatcgt gggcatcgtt gctggcctgg ctgtcctggc tgtcctagct gtcctaggag      1380
     ctgtgatggc tgttgtgatg tgtaggagga agagctcagn nnnnnnnnnn nnnnnnnnnn      1440
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1500
     nnnnnnnnnn nnnnnnnnng tggaaaagga gggagctgct ctcaggctgc gtccagcaac      1560
     agtgcccagg gctctgatga gtctctcatc gcttgtaaag nnnnnnnnnn nnnnnnnnnn      1620
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1680
     nnnnnnnnnn nnnnnnnnnn cctga                                            1705
//


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