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EBI Dbfetch

ID   FN806794; SV 2; linear; genomic DNA; STD; HUM; 1796 BP.
XX
AC   FN806794;
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DT   21-APR-2010 (Rel. 104, Created)
DT   26-OCT-2011 (Rel. 110, Last updated, Version 2)
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DE   Homo sapiens HLA-A pseudogene, allele HLA-A*02:250N, isolate 2
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KW   .
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   revised by [3]
RA   Qu J.;
RT   ;
RL   Submitted (01-APR-2010) to the INSDC.
RL   Qu J., Beijing Genomics Institute, Yantian District, Bei Shan Industrial
RL   Zone, Shenzhen, CHINA.
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RN   [2]
RA   Qu J., Li J., Chen H.;
RT   "Identification of 89 HLA-A, B, DRB1 novel genes";
RL   Unpublished.
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RN   [3]
RP   1-1796
RA   Qu J.;
RT   ;
RL   Submitted (17-OCT-2011) to the INSDC.
RL   Qu J., Beijing Genomics Institute, Yantian District, Bei Shan Industrial
RL   Zone, Shenzhen, CHINA.
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DR   MD5; 681a65a136bd6635d668f5adb2fad424.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1796
FT                   /organism="Homo sapiens"
FT                   /isolate="2"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   CDS             join(1..73,174..441,542..817,918..1193,1294..1410,
FT                   1511..1543,1644..1691,1792..1796)
FT                   /pseudo
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*02:250N"
FT                   /db_xref="IMGT/HLA:A*02:250N"
FT   exon            <1..73
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*02:250N"
FT                   /number=1
FT   gap             74..173
FT                   /estimated_length=unknown
FT   exon            174..441
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*02:250N"
FT                   /number=2
FT   variation       286..287
FT                   /replace=""
FT   gap             442..541
FT                   /estimated_length=unknown
FT   exon            542..817
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*02:250N"
FT                   /number=3
FT   gap             818..917
FT                   /estimated_length=unknown
FT   exon            918..1193
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*02:250N"
FT                   /number=4
FT   gap             1194..1293
FT                   /estimated_length=unknown
FT   exon            1294..1410
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*02:250N"
FT                   /number=5
FT   gap             1411..1510
FT                   /estimated_length=unknown
FT   exon            1511..1543
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*02:250N"
FT                   /number=6
FT   gap             1544..1643
FT                   /estimated_length=unknown
FT   exon            1644..1691
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*02:250N"
FT                   /number=7
FT   gap             1692..1791
FT                   /estimated_length=unknown
FT   exon            1792..>1796
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*02:250N"
FT                   /number=8
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SQ   Sequence 1796 BP; 219 A; 322 C; 368 G; 187 T; 700 other;
     atggccgtca tggcgccccg aaccctcgtc ctgctactct cgggggctct ggccctgacc        60
     cagacctggg cggnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       120
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnngctctca       180
     ctccatgagg tatttcttca catccgtgtc ccggcccggc cgcggggagc cccgcttcat       240
     cgcagtgggc tacgtggacg acacgcagtt cgtgcggttc gacagcgacg ccgcgagcca       300
     gaggatggag ccgcgggcgc cgtggataga gcaggagggt ccggagtatt gggacgggga       360
     gacacggaaa gtgaaggccc actcagactc accgagtgga cctggggacc ctgcgcggct       420
     actacaacca gagcgaggcc gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       480
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       540
     ngttctcaca ccgtccagag gatgtatggc tgcgacgtgg ggtcggactg gcgcttcctc       600
     cgcgggtacc accagtacgc ctacgacggc aaggattaca tcgccctgaa agaggacctg       660
     cgctcttgga ccgcggcgga catggcagct cagaccacca agcacaagtg ggaggcggcc       720
     catgtggcgg agcagttgag agcctacctg gagggcacgt gcgtggagtg gctccgcaga       780
     tacctggaga acgggaagga gacgctgcag cgcacggnnn nnnnnnnnnn nnnnnnnnnn       840
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       900
     nnnnnnnnnn nnnnnnnacg cccccaaaac gcatatgact caccacgctg tctctgacca       960
     tgaagccacc ctgaggtgct gggccctgag cttctaccct gcggagatca cactgacctg      1020
     gcagcgggat ggggaggacc agacccagga cacggagctc gtggagacca ggcctgcagg      1080
     ggatggaacc ttccagaagt gggcggctgt ggtggtgcct tctggacagg agcagagata      1140
     cacctgccat gtgcagcatg agggtttgcc caagcccctc accctgagat gggnnnnnnn      1200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnagccgtc ttcccagccc accatcccca      1320
     tcgtgggcat cattgctggc ctggttctct ttggagctgt gatcactgga gctgtggtcg      1380
     ctgctgtgat gtggaggagg aagagctcag nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1440
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1500
     nnnnnnnnnn atagaaaagg agggagctac tctcaggctg caannnnnnn nnnnnnnnnn      1560
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1620
     nnnnnnnnnn nnnnnnnnnn nnngcagtga cagtgcccag ggctctgatg tgtctctcac      1680
     agcttgtaaa gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1740
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ntgtga          1796
//


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