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EBI Dbfetch

ID   FM209476; SV 1; linear; genomic DNA; STD; HUM; 3406 BP.
XX
AC   FM209476;
XX
DT   10-SEP-2008 (Rel. 97, Created)
DT   10-SEP-2008 (Rel. 97, Last updated, Version 2)
XX
DE   Homo sapiens HLA-A gene for MHC class I antigen, HLA-A1*0101 null allele,
DE   exons 1-8
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-3406
RA   Dunn P.P.;
RT   ;
RL   Submitted (05-SEP-2008) to the INSDC.
RL   Dunn P.P., Tissue Typing, New Zealand Blood Service, 71 Great South Road,
RL   Epsom, Auckland, 1142, NEW ZEALAND.
XX
RN   [2]
RA   Dunn P.P.;
RT   "A silent substitution in exon 4 is responsible for the silent expression
RT   of an HLA-A*01 allele";
RL   Unpublished.
XX
DR   MD5; 63ec801e5cd13e6502aeb994a1a4c502.
DR   IMGT/HLA; A*01:01:38L; HLA03587.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3406
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   CDS             join(333..405,536..805,1047..1322,1902..2177,2280..2396,
FT                   2839..2871,3014..3061,3231..3235)
FT                   /pseudo
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*0101 null"
FT                   /note="not detectable by serology"
FT                   /db_xref="PSEUDO:CAR64713.1"
FT   exon            <333..405
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*0101 null"
FT                   /number=1
FT   intron          406..535
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*0101 null"
FT                   /number=1
FT   exon            536..805
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*0101 null"
FT                   /number=2
FT   intron          806..1046
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*0101 null"
FT                   /number=2
FT   exon            1047..1322
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*0101 null"
FT                   /number=3
FT   intron          1323..1901
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*0101 null"
FT                   /number=3
FT   exon            1902..2177
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*0101 null"
FT                   /number=4
FT   intron          2178..2279
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*0101 null"
FT                   /number=4
FT   exon            2280..2396
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*0101 null"
FT                   /number=5
FT   intron          2397..2838
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*0101 null"
FT                   /number=5
FT   exon            2839..2871
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*0101 null"
FT                   /number=6
FT   intron          2872..3013
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*0101 null"
FT                   /number=6
FT   exon            3014..3061
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*0101 null"
FT                   /number=7
FT   intron          3062..3230
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*0101 null"
FT                   /number=7
FT   exon            3231..3235
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*0101 null"
FT                   /number=8
XX
SQ   Sequence 3406 BP; 654 A; 979 C; 1055 G; 718 T; 0 other;
     ctcagggaga cattgagaca gagcgcttcg cacaggagca gaggggtcag ggcgaagtcc        60
     cagggcccca ggcgtggctc tcagggtctc aggccccgaa ggcggtgtat ggattgggga       120
     gtcccagcct tggggattcc ccaactccgc agtttctttt ctccctctcc caacctacgt       180
     agggtccttc atcctggata ctcacgacgc ggacccagtt ctcactccca ttgggtgtcg       240
     ggtttccaga gaagccaatc agtgtcgtcg cggtcgctgt tctaaagtcc gcacgcaccc       300
     accgggactc agattctccc cagacgccga ggatggccgt catggcgccc cgaaccctcc       360
     tcctgctact ctcgggggcc ctggccctga cccagacctg ggcgggtgag tgcggggtcg       420
     ggagggaaac cgcctctgcg gggagaagca aggggccctc ctggcggggg cgcaggaccg       480
     ggggagccgc gccgggagga gggtcgggca ggtctcagcc actgctcgcc cccaggctcc       540
     cactccatga ggtatttctt cacatccgtg tcccggcccg gccgcgggga gccccgcttc       600
     atcgccgtgg gctacgtgga cgacacgcag ttcgtgcggt tcgacagcga cgccgcgagc       660
     cagaagatgg agccgcgggc gccgtggata gagcaggagg ggccggagta ttgggaccag       720
     gagacacgga atatgaaggc ccactcacag actgaccgag cgaacctggg gaccctgcgc       780
     ggctactaca accagagcga ggacggtgag tgaccccggc ccggggcgca ggtcacgacc       840
     cctcatcccc cacggacggg ccaggtcgcc cacagtctcc gggtccgaga tccaccccga       900
     agccgcggga ctccgagacc cttgtcccgg gagaggccca ggcgccttta cccggtttca       960
     ttttcagttt aggccaaaaa tccccccggg ttggtcgggg cggggcgggg ctcgggggac      1020
     tgggctgacc gcggggtcgg ggccaggttc tcacaccatc cagataatgt atggctgcga      1080
     cgtggggccg gacgggcgct tcctccgcgg gtaccggcag gacgcctacg acggcaagga      1140
     ttacatcgcc ctgaacgagg acctgcgctc ttggaccgcg gcggacatgg cagctcagat      1200
     caccaagcgc aagtgggagg cggtccatgc ggcggagcag cggagagtct acctggaggg      1260
     ccggtgcgtg gacgggctcc gcagatacct ggagaacggg aaggagacgc tgcagcgcac      1320
     gggtaccagg ggccacgggg cgcctccctg atcgcctata gatctcccgg gctggcctcc      1380
     cacaaggagg ggagacaatt gggaccaaca ctagaatatc accctccctc tggtcctgag      1440
     ggagaggaat cctcctgggt ttccagatcc tgtaccagag agtgactctg aggttccgcc      1500
     ctgctctctg acacaattaa gggataaaat ctctgaagga gtgacgggaa gacgatccct      1560
     cgaatactga tgagtggttc cctttgacac cggcagcagc cttgggcccg tgacttttcc      1620
     tctcaggcct tgttctctgc ttcacactca atgtgtgtgg gggtctgagt ccagcacttc      1680
     tgagtctctc agcctccact caggtcagga ccagaagtcg ctgttccctt ctcagggaat      1740
     agaagattat cccaggtgcc tgtgtccagg ctggtgtctg ggttctgtgc tctcttcccc      1800
     atcccgggtg tcctgtccat tctcaagatg gccacatgcg tgctggtgga gtgtcccatg      1860
     acagatgcaa aatgcctgaa ttttctgact cttcccgtca gaccccccca agacacatat      1920
     gacccaccac cccatctctg accatgaggc caccctgagg tgctgggccc tgggcttcta      1980
     ccctgcagag atcacactga cctggcagcg ggatggggag gaccagaccc aggacacgga      2040
     gctcgtggag accaggcctg caggggatgg aaccttccag aagtgggcgg ctgtggtggt      2100
     gccttctgga gaggagcaga gatacacctg ccatgtgcag catgagggtc tgcccaagcc      2160
     cctcaccctg agatggggta aggagggaga tgggggtgtc atgtctctta gggaaagcag      2220
     gagcctctct ggagaccttt agcagggtca gggcccctca ccttcccctc ttttcccaga      2280
     gctgtcttcc cagcccacca tccccatcgt gggcatcatt gctggcctgg ttctccttgg      2340
     agctgtgatc actggagctg tggtcgctgc cgtgatgtgg aggaggaaga gctcaggtgg      2400
     agaaggggtg aagggtgggg tctgagattt cttgtctcac tgagggttcc aagccccagc      2460
     tagaaatgtg ccctgtctca ttactgggaa gcaccttcca caatcatggg ccgacccagc      2520
     ctgggccctg tgtgccagca cttactcttt tgtaaagcac ctgttaaaat gaaggacaga      2580
     tttatcacct tgattacggc ggtgatggga cctgatccca gcagtcacaa gtcacagggg      2640
     aaggtccctg aggacagacc tcaggagggc tattggtcca ggacccacac ctgctttctt      2700
     catgtttcct gatcccgccc tgggtctgca gtcacacatt tctggaaact tctctggggt      2760
     ccaagactag gaggttcctc taggacctta aggccctggc tcctttctgg tatctcacag      2820
     gacattttct tcccacagat agaaaaggag ggagttacac tcaggctgca agtaagtatg      2880
     aaggaggctg atgcctgagg tccttgggat attgtgtttg ggagcccatg ggggagctca      2940
     cccaccccac aattcctcct ctagccacat cttctgtggg atctgaccag gttctgtttt      3000
     tgttctaccc caggcagtga cagtgcccag ggctctgatg tgtctctcac agcttgtaaa      3060
     ggtgagagct tggagggcct gatgtgtgtt gggtgttggg tggaacagtg gacacagctg      3120
     tgctatgggg tttctttgcg ttggatgtat tgagcatgcg atgggctgtt taaggtgtga      3180
     cccctcactg tgatggatat gaatttgttc atgaatattt ttttctatag tgtgagacag      3240
     ctgccttgtg tgggactgag aggcaagagt tgttcctgcc cttccctttg tgacttgaag      3300
     aaccctgact ttgtttctgc aaaggcacct gcatgtgtct gtgttcgtgt aggcataatg      3360
     tgaggaggtg gggagagcac cccaccccca tgtccaccat gaccct                     3406
//


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