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EBI Dbfetch

ID   EU564806; SV 1; linear; genomic DNA; STD; HUM; 1637 BP.
XX
AC   EU564806;
XX
DT   05-APR-2008 (Rel. 95, Created)
DT   17-JUN-2008 (Rel. 96, Last updated, Version 2)
XX
DE   Homo sapiens MHC class I antigen (HLA-B) gene, HLA-B*9546 allele, exons 2
DE   through 4 and partial cds.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-1637
RA   Cao K., Wang Q., Duong H., Naim M., Ong G., Reinsmoen N.L.;
RT   "A Novel B*150101 Variant Identified by Sequence Based Typing";
RL   Unpublished.
XX
RN   [2]
RP   1-1637
RA   Cao K., Wang Q., Duong H., Naim M., Ong G., Reinsmoen N.L.;
RT   ;
RL   Submitted (13-MAR-2008) to the INSDC.
RL   HLA Laboratory, Comprehensive Transplant Center, Department of Medicine,
RL   Cedars-Sinai Health System, 8723 Alden Dr. SSB-197, Los Angeles, CA 90048,
RL   USA
XX
DR   MD5; 39a1927d7a3f03cd35b5f854daef53b2.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1637
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gene            <1..>1637
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*9546"
FT   mRNA            join(<1..270,514..789,1362..>1637)
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*9546"
FT                   /product="MHC class I antigen"
FT   CDS             join(<1..270,514..789,1362..>1637)
FT                   /codon_start=3
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*9546"
FT                   /product="MHC class I antigen"
FT                   /db_xref="GOA:B2D0I5"
FT                   /db_xref="IMGT/HLA:B*15:146"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR027648"
FT                   /db_xref="UniProtKB/TrEMBL:B2D0I5"
FT                   /protein_id="ACB56574.1"
FT                   /translation="SHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRMA
FT                   PRAPWIEQEGPEYWDRETQISKTNTQTYRESLRNLRGYYNQSEAGSHTLQRMYGCDVGP
FT                   DGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAAREAEQWRAYLEGLC
FT                   VEWLRRYLENGKETLQRADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGED
FT                   QTQDTELVEARPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW"
FT   exon            1..270
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*9546"
FT                   /number=2
FT   gap             271..513
FT                   /estimated_length=243
FT   exon            514..789
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*9546"
FT                   /number=3
FT   gap             790..1361
FT                   /estimated_length=572
FT   exon            1362..1637
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*9546"
FT                   /number=4
XX
SQ   Sequence 1637 BP; 177 A; 257 C; 276 G; 112 T; 815 other;
     gctcccactc catgaggtat ttctacaccg ccatgtcccg gcccggccgc ggggagcccc        60
     gcttcatcgc agtgggctac gtggacgaca cccagttcgt gaggttcgac agcgacgccg       120
     cgagtccgag gatggcgccc cgggcgccat ggatagagca ggaggggccg gagtattggg       180
     accgggagac acagatctcc aagaccaaca cacagactta ccgagagagc ctgcggaacc       240
     tgcgcggcta ctacaaccag agcgaggccg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       360
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       420
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       480
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnggtctca caccctccag aggatgtacg       540
     gctgcgacgt ggggccggac gggcgcctcc tccgcgggca tgaccagtcc gcctacgacg       600
     gcaaggatta catcgccctg aacgaggacc tgagctcctg gaccgcggcg gacacggcgg       660
     ctcagatcac ccagcgcaag tgggaggcgg cccgtgaggc ggagcagtgg agagcctacc       720
     tggagggcct gtgcgtggag tggctccgca gatacctgga gaacgggaag gagacgctgc       780
     agcgcgcggn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       840
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       900
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       960
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1020
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1080
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1140
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1320
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn naccccccaa agacacatgt      1380
     gacccaccac cccatctctg accatgaggc caccctgagg tgctgggccc tgggcttcta      1440
     ccctgcggag atcacactga cctggcagcg ggatggcgag gaccaaactc aggacaccga      1500
     gcttgtggag gccagaccag caggagatag aaccttccag aagtgggcag ctgtggtggt      1560
     gccttctgga gaagagcaga gatacacatg ccatgtacag catgaggggc tgccgaagcc      1620
     cctcaccctg agatggg                                                     1637
//


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