Dbfetch

Dbfetch

ID   EU478436; SV 1; linear; genomic DNA; STD; HUM; 1663 BP.
XX
AC   EU478436;
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DT   11-MAR-2008 (Rel. 95, Created)
DT   05-JUL-2008 (Rel. 96, Last updated, Version 3)
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DE   Homo sapiens MHC class I antigen (HLA-A) gene, HLA-A*3315 allele, exons 2
DE   through 4 and partial cds.
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KW   .
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RP   1-1663
RX   DOI; 10.1111/j.1399-0039.2008.01065.x.
RX   PUBMED; 18588578.
RA   Lim J., Kim Y., Han K., Kim H.J., Min W.S.;
RT   "A novel HLA-A*3315 allele identified by haplotype-specific extraction and
RT   sequence-based typing";
RL   Tissue Antigens 72(1):76-77(2008).
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RN   [2]
RP   1-1663
RA   Lim J., Kim Y., Han K., Kim H.J., Min W.S.;
RT   ;
RL   Submitted (11-FEB-2008) to the INSDC.
RL   Laboratory Medicine, St. Mary's Hospital, College of Medicine, The Catholic
RL   University of Korea, 62 Yeouido-dong, Yeongdeungpo-gu, Seoul 150-713, Korea
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DR   MD5; f7d76b5b48a8ddf778f9e7d14ba4236d.
DR   IMGT/HLA; HLA-A*33:15; HLA03246.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1663
FT                   /organism="Homo sapiens"
FT                   /chromosome="6"
FT                   /map="6p21.3"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gene            <1..>1663
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*3315"
FT   mRNA            join(<1..270,512..787,1388..>1663)
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*3315"
FT                   /product="MHC class I antigen"
FT   CDS             join(<1..270,512..787,1388..>1663)
FT                   /codon_start=3
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*3315"
FT                   /product="MHC class I antigen"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="InterPro:IPR037055"
FT                   /db_xref="UniProtKB/TrEMBL:B1PMG1"
FT                   /protein_id="ACA51037.1"
FT                   /translation="SHSMRYFTTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRME
FT                   PRAPWIEQEGPEYWDRNTRNVKAHSQIDRVDLGTLRGYYNQSEAGSHTIQMMYGCDVGS
FT                   DGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWEAARVAEQLRAYLEGTC
FT                   VEWLRRYLENGKETLQRTDPPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQWDGED
FT                   QTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRW"
FT   exon            1..270
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*3315"
FT                   /number=2
FT   gap             271..511
FT                   /estimated_length=241
FT   exon            512..787
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*3315"
FT                   /number=3
FT   gap             788..1387
FT                   /estimated_length=600
FT   exon            1388..>1663
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*3315"
FT                   /number=4
XX
SQ   Sequence 1663 BP; 165 A; 248 C; 284 G; 125 T; 841 other;
     gctcccactc catgaggtat ttcaccacat ccgtgtcccg gcccggccgc ggggagcccc        60
     gcttcatcgc cgtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg       120
     cgagccagag gatggagccg cgggcgccgt ggatagagca ggaggggccg gagtattggg       180
     accggaacac acggaatgtg aaggcccact cacagattga ccgagtggac ctggggaccc       240
     tgcgcggcta ctacaaccag agcgaggccg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       360
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       420
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       480
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ngttctcaca ccatccagat gatgtatggc       540
     tgcgacgtgg ggtcggacgg gcgcttcctc cgcgggtacc agcaggacgc ctacgacggc       600
     aaggattaca tcgccttgaa cgaggacctg cgctcttgga ccgcggcgga catggcggct       660
     cagatcaccc agcgcaagtg ggaggcggcc cgtgtggcgg agcagttgag agcctacctg       720
     gagggcacgt gcgtggagtg gctccgcaga tacctggaga acgggaagga gacgctgcag       780
     cgcacggnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       840
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       900
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       960
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1020
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1080
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1140
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1320
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1380
     nnnnnnnacc cccccaagac gcatatgact caccacgctg tctctgacca tgaggccacc      1440
     ctgaggtgct gggccctgag cttctaccct gcggagatca cactgacctg gcagtgggat      1500
     ggggaggacc agacccagga cacggagctc gtggagacca ggcctgcagg ggatggaacc      1560
     ttccagaagt gggcgtctgt ggtggtgcct tctggacagg agcagagata cacctgccat      1620
     gtgcagcatg agggtctccc caagcccctc accctgagat ggg                        1663
//