Dbfetch
ID EU017384; SV 1; linear; genomic DNA; STD; HUM; 1657 BP.
XX
AC EU017384;
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DT 01-AUG-2007 (Rel. 92, Created)
DT 17-JUN-2008 (Rel. 96, Last updated, Version 3)
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DE Homo sapiens MHC class I antigen (HLA-Cw) gene, HLA-Cw*07new allele, exons
DE 2 through 4 and partial cds.
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KW .
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OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-1657
RX DOI; 10.1111/j.1399-0039.2007.00981.x.
RX PUBMED; 18069932.
RA Thompson E.M., Kashi Z.M., Martin R.K., Alcorn J.L., Tidey L.;
RT "Identification of the novel HLA-C allele Cw*0751";
RL Tissue Antigens 71(2):178-179(2008).
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RN [2]
RP 1-1657
RA Thompson E.M., Mehdizadeh Kashi Z., Martin R.K., Alcorn J.L.;
RT "Identification of a novel HLA-Cw allele with a sequence-based typing and
RT cloning approach";
RL Unpublished.
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RN [3]
RP 1-1657
RA Thompson E.M., Mehdizadeh Kashi Z., Martin R.K., Alcorn J.L.;
RT ;
RL Submitted (05-JUL-2007) to the INSDC.
RL Kashi Clinical Laboratories, 8075 SW Nimbus Ave., Beaverton, OR 97008, USA
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DR MD5; 985cda09552568171f585e5807c97cc0.
DR IMGT/HLA; HLA-C*07:51; HLA03013.
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FH Key Location/Qualifiers
FH
FT source 1..1657
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene <1..>1657
FT /gene="HLA-Cw"
FT /allele="HLA-Cw*07new"
FT mRNA join(<1..270,520..795,1382..>1657)
FT /gene="HLA-Cw"
FT /allele="HLA-Cw*07new"
FT /product="MHC class I antigen"
FT CDS join(<1..270,520..795,1382..>1657)
FT /codon_start=3
FT /gene="HLA-Cw"
FT /allele="HLA-Cw*07new"
FT /product="MHC class I antigen"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:A7LH95"
FT /protein_id="ABS56982.1"
FT /translation="SHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPRGE
FT PRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRNLRGYYNQSEAGSHTLQRMSGCDLGP
FT DGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQLRAYLEGTC
FT VEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLTWQRDGED
FT QTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSW"
FT exon 1..270
FT /gene="HLA-Cw"
FT /allele="HLA-Cw*07new"
FT /number=2
FT gap 271..519
FT /estimated_length=249
FT exon 520..795
FT /gene="HLA-Cw"
FT /allele="HLA-Cw*07new"
FT /number=3
FT gap 796..1381
FT /estimated_length=586
FT exon 1382..1657
FT /gene="HLA-Cw"
FT /allele="HLA-Cw*07new"
FT /number=4
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SQ Sequence 1657 BP; 167 A; 262 C; 284 G; 109 T; 835 other;
gctcccactc catgaggtat ttcgacaccg ccgtgtcccg gcccggccgc ggagagcccc 60
gcttcatctc agtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg 120
cgagtccgag aggggagccg cgggcgccgt gggtggagca ggaggggccg gagtattggg 180
accgggagac acagaagtac aagcgccagg cacaggctga ccgagtgagc ctgcggaacc 240
tgcgcggcta ctacaaccag agcgaggccg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 300
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 360
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 420
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 480
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnng gtctcacacc ctccagagga 540
tgtctggctg cgacctgggg cccgacgggc gcctcctccg cgggtatgac cagtccgcct 600
acgacggcaa ggattacatc gccctgaacg aggacctgcg ctcctggacc gccgcggaca 660
ccgcggctca gatcacccag cgcaagttgg aggcggcccg tgcggcggag cagctgagag 720
cctacctgga gggcacgtgc gtggagtggc tccgcagata cctggagaac gggaaggaga 780
cgctgcagcg cgcagnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 840
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 900
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 960
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1020
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1080
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1140
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1200
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1260
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1320
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1380
naacccccaa agacacacgt gacccaccac cccctctctg accatgaggc caccctgagg 1440
tgctgggccc tgggcttcta ccctgcggag atcacactga cctggcagcg ggatggggag 1500
gaccagaccc aggacaccga gcttgtggag accaggccag caggagatgg aaccttccag 1560
aagtgggcag ctgtggtggt gccttctgga caagagcaga gatacacgtg ccatatgcag 1620
cacgaggggc tgcaagagcc cctcaccctg agctggg 1657
//