Dbfetch
ID BC025105; SV 1; linear; mRNA; STD; MUS; 1423 BP. XX AC BC025105; XX DT 12-MAR-2002 (Rel. 71, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 16) XX DE Mus musculus V-set and immunoglobulin domain containing 4, mRNA (cDNA clone DE MGC:36211 IMAGE:4162875), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1423 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1423 RG NIH MGC Project RA ; RT ; RL Submitted (05-MAR-2002) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 73bb9678250834d88d0db12e2ff2473a. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Jeffrey E. Green, M.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 61 Row: i Column: 24 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 31343017. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..1423 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Li9" FT /clone="MGC:36211 IMAGE:4162875" FT /tissue_type="Liver, normal. 5 month old male mouse." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..1423 FT /gene="Vsig4" FT /note="synonyms: MGC36211, Z39IG, A530061A11" FT CDS 47..889 FT /codon_start=1 FT /gene="Vsig4" FT /product="V-set and immunoglobulin domain containing 4" FT /protein_id="AAH25105.1" FT /translation="MEISSGLLFLGHLIVLTYGHPTLKTPESVTGTWKGDVKIQCIYDP FT LRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVSLQINTLQ FT MDDRNHYTCEVTWQTPDGNQVIRDKIIELRVRKYNPPRINTEAPTTLHSSLEATTIMSS FT TSDLTTNGTGKLEETIAGSGRNLPIFAIIFIISLCCIVAVTIPYILFRCRTFQQEYVYG FT VSRVFARKTSNSEETTRVTTIATDEPDSQALISDYSDDPCLSQEYQITIRSTMSIPAC" FT misc_difference 1411..1423 FT /gene="Vsig4" FT /note="polyA tail: 13 bases do not align to the mouse FT genome." XX SQ Sequence 1423 BP; 428 A; 343 C; 283 G; 369 T; 0 other; cagcagcaag aggatggaag gatgaataga agtagcttca aataggatgg agatctcatc 60 aggcttgctg ttcctgggcc acctaatagt gctcacctat ggccacccca ccctaaaaac 120 acctgagagt gtgacaggga cctggaaagg agatgtgaag attcagtgca tctatgatcc 180 cctgagaggc tacaggcaag ttttggtgaa atggctggta agacacggct ctgactccgt 240 caccatcttc ctacgtgact ccactggaga ccatatccag caggcaaagt acagaggccg 300 cctgaaagtg agccacaaag ttccaggaga tgtgtccctc caaataaata ccctgcagat 360 ggatgacagg aatcactata catgtgaggt cacctggcag actcctgatg gaaaccaagt 420 aataagagat aagatcattg agctccgtgt tcggaaatat aatccaccta gaatcaatac 480 tgaagcacct acaaccctgc actcctcttt ggaagcaaca actataatga gttcaacctc 540 tgacttgacc actaatggga ctggaaaact tgaggagacc attgctggtt cagggaggaa 600 cctgccaatc tttgccataa tcttcatcat ctccctttgc tgcatagtag ctgtcaccat 660 accttatatc ttgttccgct gcaggacatt ccaacaagag tatgtctatg gagtgagcag 720 ggtgtttgcc aggaagacaa gcaactctga agaaaccaca agggtgacta ccatcgcaac 780 tgatgaacca gattcccagg ctctgattag tgactactct gatgatcctt gcctcagcca 840 ggagtaccaa ataaccatca gatcaacaat gtctattcct gcctgctgaa cacagtttcc 900 agaaactaag aagttcttgc tactgaagaa aataacatct gctaaaatgc ccctactaag 960 tcaaggtcta ctggcgtaat tacctgttac ttatttacta cttgccttca acatagcttt 1020 ctccctggct tcctttcttc ttagacaacc taaagtatct atctagtctg ccaattctgg 1080 ggccattgag aaatcctggg tttggctaag aatatactac atgcacctca agaaatctag 1140 cttctgggct tcacccagaa caattttctt cctagggcct tcacaactct tctccaaaca 1200 gcagagaaat tccatagcag tagaggttct ttatcatgcc tccagacagc gtgagtctca 1260 gtcctacaaa ctcagacaag cacatgggtc taggattact cctctttctc tagggccaga 1320 tgacttttaa ttgatattac tattgctaca ttatgaatct aatgcacatg tattcttttg 1380 ttgttaataa atgtttaatc atgacatcaa aaaaaaaaaa aaa 1423 //