Dbfetch
ID AY645754; SV 1; linear; genomic DNA; STD; HUM; 6969 BP. XX AC AY645754; XX DT 19-JUL-2004 (Rel. 80, Created) DT 17-JUN-2008 (Rel. 96, Last updated, Version 4) XX DE Homo sapiens isolate CEPH1416-1 MHC class Ib antigen (HLA-F) gene, DE HLA-F*010101 variant allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-6969 RX DOI; 10.1007/s00251-005-0076-z. RX PUBMED; 16570139. RA Pyo C.W., Williams L.M., Moore Y., Hyodo H., Li S.S., Zhao L.P., RA Sageshima N., Ishitani A., Geraghty D.E.; RT "HLA-E, HLA-F, and HLA-G polymorphism: genomic sequence defines haplotype RT structure and variation spanning the nonclassical class I genes"; RL Immunogenetics 58(4):241-251(2006). XX RN [2] RP 1-6969 RA Pyo C.-W., Ishitani A., Moore Y.F., Geraghty D.E.; RT ; RL Submitted (04-JUN-2004) to the INSDC. RL Clinical Division, Fred Hutchinson Cancer Research Center, 1100 Fairview RL Ave. N., D4-100, Seattle, WA 98109-1024, USA XX DR MD5; 1c08dd8dca41f7a7740066af013baea4. DR Ensembl-Gn; ENSG00000137403; homo_sapiens. DR Ensembl-Gn; ENSG00000204642; homo_sapiens. DR Ensembl-Gn; ENSG00000206509; homo_sapiens. DR Ensembl-Gn; ENSG00000229698; homo_sapiens. DR Ensembl-Gn; ENSG00000235220; homo_sapiens. DR Ensembl-Gn; ENSG00000237508; homo_sapiens. DR Ensembl-Tr; ENST00000259951; homo_sapiens. DR Ensembl-Tr; ENST00000334668; homo_sapiens. DR Ensembl-Tr; ENST00000359076; homo_sapiens. DR Ensembl-Tr; ENST00000376848; homo_sapiens. DR Ensembl-Tr; ENST00000376861; homo_sapiens. DR Ensembl-Tr; ENST00000383515; homo_sapiens. DR Ensembl-Tr; ENST00000420067; homo_sapiens. DR Ensembl-Tr; ENST00000434407; homo_sapiens. DR Ensembl-Tr; ENST00000440590; homo_sapiens. DR IMGT/HLA; HLA-F*01:03:01:02; HLA02268. XX FH Key Location/Qualifiers FH FT source 1..6969 FT /organism="Homo sapiens" FT /chromosome="6" FT /map="6p21.3" FT /isolate="CEPH1416-1" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gap 973..1340 FT /estimated_length=368 FT gene <1919..>4861 FT /gene="HLA-F" FT /allele="HLA-F*010101 variant" FT mRNA join(<1919..1982,2113..2382,2628..2903,3486..3761, FT 3901..4017,4465..4497,4857..>4861) FT /gene="HLA-F" FT /allele="HLA-F*010101 variant" FT /product="MHC class Ib antigen" FT CDS join(1919..1982,2113..2382,2628..2903,3486..3761, FT 3901..4017,4465..4497,4857..4861) FT /codon_start=1 FT /gene="HLA-F" FT /allele="HLA-F*010101 variant" FT /product="MHC class Ib antigen" FT /db_xref="GOA:P30511" FT /db_xref="HGNC:HGNC:4963" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="PDB:5IUE" FT /db_xref="PDB:5KNM" FT /db_xref="UniProtKB/Swiss-Prot:P30511" FT /protein_id="AAT73237.1" FT /translation="MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIA FT VEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLR FT RYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQI FT TQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATL FT RCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCH FT VQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGS FT YSQAAV" XX SQ Sequence 6969 BP; 1549 A; 1667 C; 1777 G; 1608 T; 368 other; ggtaatggaa cagtgctaga gccactattc aggagtgaca gagtggtggg gactaaggga 60 agaggagggc ctgagggatg agagggacgg agggaagggc tggagaagca ggaggtgagg 120 agaaggagca gagggacaga atttgaaagc agcagaattc ttagctttaa acacattttt 180 ttataaattt ttaatacatc catctacaga gcctagcagg gtgttccttg catttggcct 240 ttaacacctt atgtgggact gcctaaaaat taattgcttt ttctgctttc tttcaggttt 300 aaaaaaatac taagtgttcc aataaaacat gcacaccact tagatgcgga tacttcctaa 360 aaacaggaag tgcatgagca ctggtgaggg gcattgtgac tgcgttgaac acttgcaact 420 ttgaggtgaa tgaatgtatt ggctcctggt tgcaatatac aatcacacgt tgtgctactt 480 tgtattgtca ggagatgtcc tggactccca cagaaactca gggctatgga atgaaggtaa 540 ttttagaata caacaagagt cacagataca tagtctggga aagcaaaact taggagctct 600 gagagttgta caactgtaat gcatttagac acatttatat atcaaggggc caaagtaaca 660 gtttttacac ataagattcc tgattggtcg ggcgcggtgg ctcatgcctg taatcgcagc 720 actttgggag gccgaggcgg gaggatcacg aggtcaggag atcgagacca tcctggctaa 780 cacggtgaaa cccgtctcta caaaaaaatt agccgggcgt ggtggcgggc atctgtagtc 840 tcagctactc gggaggctga agcagaagaa tggcgtgaac ccgggacgca gagcttgcag 900 tgagccgaga tcgcgccact gcactccagc ctgggcggca gagagagact ccgtctcaaa 960 aaaaaaaaaa aannnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1020 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1080 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1140 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1200 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1260 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1320 nnnnnnnnnn nnnnnnnnnn gaagaaaagg aagaagaaga aactgtctct acaccttcat 1380 tctcaggaca agttcattgt ctggcaccaa gctccttggg gtgaattttc ttccaaaaga 1440 gtccggggag tccaggtatg gaatgggagg cagaaagttc aatcaaggga ctgggatttc 1500 ggaatgaata atgaagggag atggactggg tccatgccga aggtttctcc ctggtttctc 1560 agcccccggg cgaagactca gggagacatt gagacacacc ctgcacagga gggggagggg 1620 gagggggagg gcaaagtccc agggccccag gagtggctct caagggctca ggccccgagg 1680 cggtgtctgg ggttgggagg ctcagtattg agaattcccc atctccccag agtttctctt 1740 tctctcccaa cccgtgtcag gtccttcttc ctggatactc ataacgcggc cccatttctc 1800 actcccattg ggcgtcgcgt ttctagagaa gccaatcagt gtcgccgcag ttcccaggtt 1860 ctaaagtccc acgcaccccg cgggactcat atttttccca gacgcggagg ttggggtcat 1920 ggcgccccga agcctcctcc tgctgctctc aggggccctg gccctgaccg atacttgggc 1980 gggtgagtgc ggggtccaga gagaaacggc ctctgtgggg aggagtgagg ggcccgcccg 2040 gtgggggcgc aggactcagg gagccgcctc cggaggaggg tctggcgggt ctcagcccct 2100 cctcgccccc aggctcccac tccttgaggt atttcagcac cgctgtgtcg cggcccggcc 2160 gcggggagcc ccgctacatc gccgtggagt acgtagacga cacgcaattc ctgcggttcg 2220 acagcgacgc cgcgattccg aggatggagc cgcgggagcc gtgggtggag caagaggggc 2280 cgcagtattg ggagtggacc acagggtacg ccaaggccaa cgcacagact gaccgagtgg 2340 ccctgaggaa cctgctccgc cgctacaacc agagcgaggc tggtgagtga acccggccgg 2400 gggcgcaggt cacgaccacc ccccatccgc cacggaccgc ccgggtccct cagagtctcc 2460 ggatccgaaa tctaccccga ggcagcggga cccgcccaga ccctccaccc gggagagtcc 2520 caggcgcctt tacccaggtt cattttcagt ttaggccaaa atccccgcgg gttgggcggg 2580 gagggggcgg ggctagctgg gcggggctga ctgcggggac cggctagggt ctcacaccct 2640 ccagggaatg aatggctgcg acatggggcc cgacggacgc ctcctccgcg ggtatcacca 2700 gcacgcgtac gacggcaagg attacatctc cctgaacgag gacctgcgct cctggaccgc 2760 ggcggacacc gtggctcaga tcacccagcg cttctatgag gcagaggaat atgcagagga 2820 gttcaggacc tacctggagg gcgagtgcct ggagttgctc cgcagatact tggagaatgg 2880 gaaggagacg ctacagcgcg caggtaccag gggccatggg cgccttccct atctcctgta 2940 gatctcttgg gatggcctcg cacaaggttg ggaggaaagt ggacccaatg ctaggatatc 3000 gccctccctc tagtcctgag taggaagaat cttcctggct ttcgagatcc ggtaccagag 3060 agtgactgtg agagtccgcc ctgctctctg ggacaattaa gggatgaaat ttctgaggga 3120 atggagggaa gacagtccct ggaataccga tccgcggtcc cctttgagcc ctccaacagc 3180 cttgggcccc gtgacttttc tctcaagttt tgttctctgc ctcacactca atgtgtttga 3240 ggctctgatt ccagtccctc ggcctccact taggtcaggg ccagaagtcc ctgctccccc 3300 gtcagagact ctaactttcc aaggaatagg agattttccc aggtgtctgt gtccaggctg 3360 gtgtctgggt tctgtgctcc cttccccacc ccaggtgtcc tgtccattct caggttggtc 3420 acatgggtgc tgctggggtt tcccatgagg agtgcaaagt gcctgaattt tctgactctt 3480 ctcagatcct ccaaaggcac acgttgccca ccaccccatc tctgaccatg aggccaccct 3540 gaggtgctgg gccctgggct tctaccctgc ggagatcacg ctgacctggc agcgggatgg 3600 ggaggaacag acccaggaca cagagcttgt ggagaccagg cctgcagggg atggaacctt 3660 ccagaagtgg gccgctgtgg tggtgcctcc tggagaggaa cagagataca catgccatgt 3720 gcagcacgag gggctgcccc agcccctcat cctgagatgg ggtaaggagg gagatgggta 3780 aagaggggaa cgaggggtca tgtcttttct cagggaaagc aggagccctt ctggagctct 3840 tcagcagggt cagggctgag cctggagatc agggcccctc accttccctt cctttcccag 3900 agcagtctcc ccagcccacc atccccatcg tgggcatcgt tgctggcctt gttgtccttg 3960 gagctgtggt cactggagct gtggtcgctg ctgtgatgtg gaggaagaag agctcaggta 4020 ggaaggggtg aggagtggag tctgagtttt cttgtcccac tgggggttgc aagccccaag 4080 tagaagtgtg ccctgcctca ttactgggaa gcaccatcca cactcatggg tctacccagc 4140 ctgggccctg tgtgccagca cctactcatt tgtaaagctc ctgtgaaaat gaaggacaga 4200 ttcttcactt cgatgattat ggtggtgatg ggacctgatc ccagcagtca caaatcacag 4260 gggaaggtcc ctgctgatga cagacctcag gagggcagtt ggtccaggac ccacatctgc 4320 tttcttcata tttcttgatc ctgccctgga tctacagtta cacttttctg gaaacttctc 4380 tgggatcaaa gactaggggt ttgctctagg accttatggc cctgcctcct ttctggcctc 4440 tcacaggaca ttttcttccc atagatagaa acagagggag ctactctcag gctgcaggta 4500 agatgaagga ggctgatccc tgagattgtt gggatattgt ggtcaggagc ctatgaggga 4560 gctcacccac cccacagttc ctctagccac atctgtgggc tctgaccagg tcctgttttt 4620 gttctacccc aatcactgac agtgcccagg gctctggggt gtctctcaca gctaataaag 4680 gtgacactcc agggcagggg ccctgatgtg agtggggtgt tgggggggaa cagaggggac 4740 tcagctgtgc tattgggttt ctttgacttg gatgtcttga gcatgaaatg ggctatttag 4800 agtgttacct ctcactgtga ctgatacgaa tttgttcatg aatattttct ctatagtgtg 4860 agacagcttc cttgtgtggg actgagaagc aagatatcaa tgtagcagaa ttgcacttgt 4920 gcctcacgaa catacataaa ttttaaaaat aaagaataaa aatatatctt tttatagata 4980 caggtagata tgtttttata gcatgcacgt aaatgtgtgt gtgtgtgtgt gtgaagagaa 5040 agagtgaata gagagattaa gattctttta atggtgaaaa gatatacata tatttggaat 5100 tagccagctt gactcagttt aggtgatccc aattttggtg gcaacaacca aagcatcgta 5160 gtcaggagcc agtcgaacat atgccttcct ctctccatca gactgaatca gagtgttgac 5220 tttggccaca tcaatgtcac aaacttcttc acagcctgtt tgatctggtg cttgttggct 5280 ttaacatcca cagtgaacac aagtaggctg ttgttttcta tcttcttcac agcctactca 5340 gtggtcagcg gaaacttgat gataacatgg tggtcaagct tatttctcct gggggtgctc 5400 ttccaaggat atttgggctg cctccggagt cacagtgtct tgggccgcca gaaggtgggt 5460 gacatgtgga tcttgttttt tttgtggctg tggacatctt tcaacactgc cttcttggcc 5520 ttgcaaagcc ttcgctttgg cttcggcttt aggaggggca ggagcttcct tcttcgttct 5580 tggcaccatc ttatgaaaag ggtccagatt aagatttttg actgagtcat tctaaagtaa 5640 gttgcaagac ccatgatact agaccactaa atacttcatc acacacctcc taagaataag 5700 aaccaacatt atcacaccaa agaaaataaa taattccata atattattta aagtcctttt 5760 atgttcaaat atctccactt ctttcagtac atttttgtac ctatttttta tagcttgttt 5820 tcttaaaatg tccactcgtt gcctttggtt atgtttcttt aattacctac aatctataac 5880 aatcaaccca tcttttttct tttagaatgg cattacctgt ttcagagatg aggccaaata 5940 cctgtggaat cttctccaca ctgaatttat catattattt cccctgatgc ctttaacttt 6000 tttcctctaa ctgctatgcc tcctaaggac ctatgtagct ctgggttaaa catttggcag 6060 caatgtttac aggaggagct gtgaccgcac attcatcaca tcaggaggca cacaaagcct 6120 agggttacca ggactctttc tgaccccata cagccaaatt tatcctgact tcccagagat 6180 gcagaaccat gggctgggtg tttagtgggt atgagtgtga tattctggca ataggaggtt 6240 ctgccactct ccccattcct cacgagcttt agttccccat acactgaggt tctgagctcc 6300 agaccttcaa ccatcaggcc aggcccctcc agacctagac tcccttcctg tcttctccag 6360 ccccactctg ctttgtatct acttccggat cactttccct ctacaggccc agctcctgag 6420 tgtctctacc tctcaaacaa gtattctcat ccaggagcaa ttttcccacc agaggacatt 6480 agctatgtct ggaaaaatgt tttgttgcca tgactggagt gaggaggagg tgctaccagc 6540 atcttgtggg gaatgaccag ggatgctgaa catcctgcag tgcacaagtc agcccaatca 6600 cccacataac agataattat ccagccccaa taccaagatt gccaagggta aggaggcctg 6660 ccaggacttt ctctcccttg agtacaagct tccttgaact gagggacacc ctgaaggaaa 6720 agtgtggtcc caccccagtc atctctccct tccctggagc tccatctgta tgcctgtagt 6780 gcttaggcct gtaacctggg gtccaggaac ccaccttccc atgagactgc atgcagaagt 6840 gatgatatgt gcacacatga cttcattaca gggcattgga tgttgatatt catcaggtca 6900 gctggggccc aagacactac tcttctgcca acaggccgca atcctctgca ttagagagag 6960 ggtaaagat 6969 //