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EBI Dbfetch

ID   AY645749; SV 1; linear; genomic DNA; STD; HUM; 6941 BP.
XX
AC   AY645749;
XX
DT   19-JUL-2004 (Rel. 80, Created)
DT   17-JUN-2008 (Rel. 96, Last updated, Version 4)
XX
DE   Homo sapiens isolate Afr-Am024 MHC class Ib antigen (HLA-F) gene,
DE   HLA-F*010102 allele, complete cds.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-6941
RX   DOI; 10.1007/s00251-005-0076-z.
RX   PUBMED; 16570139.
RA   Pyo C.W., Williams L.M., Moore Y., Hyodo H., Li S.S., Zhao L.P.,
RA   Sageshima N., Ishitani A., Geraghty D.E.;
RT   "HLA-E, HLA-F, and HLA-G polymorphism: genomic sequence defines haplotype
RT   structure and variation spanning the nonclassical class I genes";
RL   Immunogenetics 58(4):241-251(2006).
XX
RN   [2]
RP   1-6941
RA   Pyo C.-W., Ishitani A., Moore Y.F., Geraghty D.E.;
RT   ;
RL   Submitted (04-JUN-2004) to the INSDC.
RL   Clinical Division, Fred Hutchinson Cancer Research Center, 1100 Fairview
RL   Ave. N., D4-100, Seattle, WA 98109-1024, USA
XX
DR   MD5; 99e4f69bc236119e2c2fcf0fde4b4631.
DR   Ensembl-Gn; ENSG00000137403; homo_sapiens.
DR   Ensembl-Gn; ENSG00000204642; homo_sapiens.
DR   Ensembl-Gn; ENSG00000206509; homo_sapiens.
DR   Ensembl-Gn; ENSG00000229698; homo_sapiens.
DR   Ensembl-Gn; ENSG00000235220; homo_sapiens.
DR   Ensembl-Gn; ENSG00000237508; homo_sapiens.
DR   Ensembl-Tr; ENST00000259951; homo_sapiens.
DR   Ensembl-Tr; ENST00000334668; homo_sapiens.
DR   Ensembl-Tr; ENST00000359076; homo_sapiens.
DR   Ensembl-Tr; ENST00000376848; homo_sapiens.
DR   Ensembl-Tr; ENST00000376861; homo_sapiens.
DR   Ensembl-Tr; ENST00000383515; homo_sapiens.
DR   Ensembl-Tr; ENST00000420067; homo_sapiens.
DR   Ensembl-Tr; ENST00000434407; homo_sapiens.
DR   Ensembl-Tr; ENST00000440590; homo_sapiens.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..6941
FT                   /organism="Homo sapiens"
FT                   /chromosome="6"
FT                   /map="6p21.3"
FT                   /isolate="Afr-Am024"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gap             972..1339
FT                   /estimated_length=368
FT   gene            <1918..>4834
FT                   /gene="HLA-F"
FT                   /allele="HLA-F*010102"
FT   mRNA            join(<1918..1981,2112..2381,2627..2902,3458..3733,
FT                   3873..3989,4437..4469,4830..>4834)
FT                   /gene="HLA-F"
FT                   /allele="HLA-F*010102"
FT                   /product="MHC class Ib antigen"
FT   CDS             join(1918..1981,2112..2381,2627..2902,3458..3733,
FT                   3873..3989,4437..4469,4830..4834)
FT                   /codon_start=1
FT                   /gene="HLA-F"
FT                   /allele="HLA-F*010102"
FT                   /product="MHC class Ib antigen"
FT                   /db_xref="GOA:P30511"
FT                   /db_xref="HGNC:HGNC:4963"
FT                   /db_xref="IMGT/HLA:F*01:01:02:05"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR027648"
FT                   /db_xref="UniProtKB/Swiss-Prot:P30511"
FT                   /protein_id="AAT73232.1"
FT                   /translation="MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIA
FT                   VEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLR
FT                   RYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQI
FT                   TQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATL
FT                   RCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCH
FT                   VQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGS
FT                   YSQAAV"
XX
SQ   Sequence 6941 BP; 1532 A; 1660 C; 1779 G; 1602 T; 368 other;
     ggtaatggaa cagtgctaga gccactattc aggagtgaca gagtggtggg gactaaggga        60
     agaggagggc ctgagggatg agagggacgg agggaagggc tggagaagca ggaggtgagg       120
     agaaggagca gagggacaga atttgaaagc agcagaattc ttagctttaa acacattttt       180
     ttataaattt gtaatacatc catctacaga gcctagcagg gtgttccttg catttggcct       240
     ttaacaccgt atgtgggact gcctaaaaat taattgcttt ttctgctttt tttcaggttt       300
     aaaaaaatac taagtgttcc aataaaacat gcacaccact taggatgcgg atacttccta       360
     aaaacaggaa gtgcattagc actggtgagg ggcattgtga ctgcgttgaa cacttgcaac       420
     tttgaggtga atgaatgtat tggctcctgg ttgcaatata caatcacacg ttgtgctact       480
     ttgtattgtc aggagatgtc ctggactccc acagaaactc agggctatgg aatgaaggta       540
     attttagaat acaacaagag tcacagatac atagtctggg aaagcaaaac ttaggagctc       600
     tgagagttgt acaactgtaa tgcatttaga catatttata tatcaagggg ccaaagtaac       660
     attttttaca cataagattc ctgatcggtc gggcgcggtg gctcatgcct gtaatcgcag       720
     cactttggga ggccgaggcg ggaggatcac gaggtcagga gatcgagacc atcctggcta       780
     acacagtgaa acccgtctct acaaaaaaat tagccgggcg tggtggcggg catctgtagt       840
     ctcagctact cgggaggctg aagcagaaga atggcgtgaa cccgggaggc agagcttgca       900
     gtgagccgag atcgcgccac tgcactccag cctgggcggc agagagactc cgtctcaaaa       960
     aaaaaaaaaa annnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1020
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1080
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1140
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1320
     nnnnnnnnnn nnnnnnnnng aagaagaaga agaagaagaa actgtctcta caccttcatt      1380
     ctcaggacaa gttcattgtc tggcaccaag ctccttgggg tgaattttct tccaaaagag      1440
     tccggggagt ccaggtatgg aatgggaggc agaaagttca atcaagggac tgggatttcg      1500
     gaatgaataa tgaagggaga tggactgggt ccatgccgaa ggtttctccc tggtttctca      1560
     gcccccgggc gaagactcag ggagacattg agacacaccc tgcacaggag ggggaggggg      1620
     agggggaggg caaagtccca gggccccagg agtggctctc aagggctcag gccccgaggc      1680
     ggtgtctggg gttgggaggc tcagtattga gaattcccca tctccccaga gtttctcttt      1740
     ctctcccaac ccgtgtcagg tccttcttcc tggttactca taacgcggcc ccatttctca      1800
     ctcccattgg gcgtcgggtt tctagagaag ccaatcagtg tcgccgcagt tcccaggttc      1860
     taaagtccca cgcaccccgc gggactcata tttttcccag acgcggaggt tggggtcatg      1920
     gcgccccgaa gcctcctcct gctgctctca ggggccctgg ccctgaccga tacttgggca      1980
     ggtgagtgcg gggtccagag agaaacggcc tctgtgggga ggagtgaggg gcccgcccgg      2040
     tgggggcgca ggactcaggg agccgcgccc ggaggagggt ctggcgggtc tcagcccctc      2100
     ctcgccccca ggctcccact ccttgaggta tttcagcacc gctgtgtcgc ggcccggccg      2160
     cggggagccc cgctacatcg ccgtggagta cgtagacgac acgcaattcc tgcggttcga      2220
     cagcgacgcc gcgattccga ggatggagcc gcgggagccg tgggtggagc aagaggggcc      2280
     gcagtattgg gagtggacca cagggtacgc caaggccaac gcacagactg accgagtggc      2340
     cctgaggaac ctgctccgcc gctacaacca gagcgaggct ggtgagtgac cccggccggg      2400
     ggcgcaggtc acgaccaccc gccatccgcc acggaccgcc cgggtccctc agagtctccg      2460
     gatccgaaat ctaccccgag gcagcgggac ccgcccagac cctccacccg ggagagtccc      2520
     aggcgccttt acccaggttc attttcagtt taggccaaaa tccccgcggg ttgggcgggg      2580
     agggggcggg gctagctggg cggggctgac tgcggggacc ggctagggtc tcacaccctc      2640
     cagggaatga atggctgcga catggggccc gacggacgcc tcctccgcgg gtatcaccag      2700
     cacgcgtacg acggcaagga ttacatctcc ctgaacgagg acctgcgctc ctggaccgcg      2760
     gcggacaccg tggctcagat cacccagcgc ttctatgagg cagaggaata tgcagaggag      2820
     ttcaggacct acctggaggg cgagtgcctg gagttgctcc gcagatactt ggagaatggg      2880
     aaggagacgc tacagcgcgc aggtaccagg ggccatgggc gccttcccta tctcctgtag      2940
     atctcttggg atggcctcgc acaaggttgg gaggaaagtg ggcccaatgc taggatatcg      3000
     ccctccctct ggtcctgagt aggaagaatc ttcctggctt tcgagatccg gtaccagaga      3060
     gtgactgtga gagtccgccc tgctctctgg gacaattaag ggatgaaatg gagggaagac      3120
     agtccctggt cccctttgag ccctccaaca gccttgggcc ccgtgacttt tctctcaagt      3180
     tttgttctct gcctcacact caatgtgttt ggggctctga ttccagtccc tcggcctcca      3240
     cttaggtcag ggccagaagt ccctgctccc cgctcagaga ctcgaacttt ccaaggaata      3300
     ggagattttc ccaggtgtct gtgtccaggc tggtgtctgg gttctgtgct cccttcccca      3360
     ccccaggtgt cctgtccagt ctcaggttgg tcacatgggt gctgctgggg tttcccatga      3420
     ggagtgcaaa gtgcctgaat tttctgactc ttctcagatc ctccaaaggc acacgttgcc      3480
     caccacccca tctctgacca tgaggccacc ctgaggtgct gggccctggg cttctaccct      3540
     gcggagatca cgctgacctg gcagcgggat ggggaggaac agacccagga cacagagctt      3600
     gtggagacca ggcctgcagg ggatggaacc ttccagaagt gggccgctgt ggtggtgcct      3660
     tctggagagg aacagagata cacatgccat gtgcagcacg aggggctgcc ccagcccctc      3720
     atcctgagat ggggtaagga gggagatggg taaagagggg aatgaggggt catgtctttt      3780
     ctcagggaaa gcaggagccc ttctggagct cttcagcagg gtcagggctg agcctggaga      3840
     tcagggcccc tcaccttccc ttcctttccc agagcagtct ccccagccca ccatccccat      3900
     cgtgggcatc gttgctggcc ttgttgtcct tggagctgtg gtcactggag ctgtggtcgc      3960
     tgctgtgatg tggaggaaga agagctcagg taggaagggg tgaggagtgg agtctgagtt      4020
     ttcttgtccc actgggggtt gcaagcccca agtagaagtg tgccctgcct cattactggg      4080
     aagcaccatc cacactcatg ggtctaccca gcctgggccc tgtgtgccag cacctactca      4140
     tttgtaaggc tcctgtgaaa atgaaggaca gattcttcac ttcgatgatt atggtggtga      4200
     tgggacctga tcccagcagt cacaaatcac aggggaaggt ccctgctgat gacagacctc      4260
     aggagggcag ttggtccagg acccacatct gctttcttca tatttcttga tcctgccctg      4320
     gatctacagt tacacttttc tggaaacttc tctgggatca aagactaggg gtttgctcta      4380
     ggaccttatg gccctgcctc ctttctggcc tctcacagga cattttcttc ccatagatag      4440
     aaacagaggg agctactctc aggctgcagg taagatgaag gaggctgatc cctgagattg      4500
     ttgggatatt gtggtcagga gcctatgagg gagctcaccc accccacagt tcctctagcc      4560
     acatctgtgg gctctgacca ggtcctgttt ttgttctacc ccaatcactg acagtgccca      4620
     gggctctggg gtgtctctca cagctaataa aggtgacact ccagggcagg ggccctgatg      4680
     tgagtggggt gttggggggg gaacagaggg gactcagctg tgctattggg tttctttgac      4740
     ttggatgtct tgagcatgaa atgggctatt tagagtgtta cctctcactg tgactgatac      4800
     gaatttgttc atgaatattt tctctatagt gtgagacagc ttccttgtgt gggactgaga      4860
     agcaagatat caatgtagca gaattgcact tgtgcctcac gaacatacat aaattttaaa      4920
     aataaagaat aaaaatatat ctttttatag atacaggtag atatgttttt atagcatgca      4980
     cgtaaatgtg tgtgtgtgtg tgtgtgaaga gaaagagtga atagagagat taagattctt      5040
     ttaatggtga aaagatatac atatatttgg aattagccag cttgactcag tttaggtgat      5100
     cccaattttg gtggcaacaa ccaaagcatc gtagtcagga gccagtcgaa catatgcctt      5160
     cctctctcca tcagactgaa tcagagtgtt gactttggcc acatcaatgt cacaagcttc      5220
     ttcacagcct gtttgatctg gtgcttgttg gctttaacat ccacagtgaa cacaagtagg      5280
     ctgttgtttt ctatcttctt cacagcctac tcagtggtca gcggactctt gatgataaca      5340
     tggtggtcaa gcttatttct cctgggggtg ctcttccaag gatatttggg ctgcctccgg      5400
     agtcacagtg tcttgggccg ccggaaggtg ggtgacatgt ggatcttgtt ttttttgtgg      5460
     ctgtggacat ctttcaacac tgccttcttg gccttgcaaa gccttcgctt tggcttcggc      5520
     tttaggaggg gcaggagctt ccttcttcgt tcttggcacc atcttatgaa aagggtccag      5580
     attaagattt ttgactgagt cattctaaag taagttgcaa gacccatgat actagaccac      5640
     taaatacttc atcacacacc tcctaagaat aagaaccaac attatcacac caaagaaaat      5700
     aaataattcc ataatattat ttaaagtcct tttatgttca aatatctcca cttctttcag      5760
     tacatttttg tacctatttt ttatagcttg ttttcttaaa atgtccactc gttgcctttg      5820
     gttatgtttc tttaattacc tacaatctat aacaatcaac ccatcttttt tcttttagaa      5880
     tggcattacc tgtttcagag atgaggccaa atacctgtgg aatcttctcc acactgaatt      5940
     tatcatatta tttcccctga tgcctttaac ttttttcctc taactgctat gcctcctaag      6000
     gacctatgta gctctgggtt aaacatttgg cagcaatgtt tacaggagga gctgtgaccg      6060
     cacattcatc acatcaggag gcacacaaag cctagggtta ccaggactct ttctgacccc      6120
     atacagccaa atttatcctg acttcccaga gatgcagaac catgggctgg gtgtttagtg      6180
     ggtatgagtg tgatattctg gcaataggag gttctgccac tctccccatt cctcacgagc      6240
     tttaggtccc cataccctga ggttctgagc tccagacctt caaccatcag gccaggcccc      6300
     tccagaccta gactcccttc ctgtcttctc cagccccact ctgctttgta tctacttccg      6360
     gatcactttc cctctacagg cccagctcct gagtgtctct acctctcaaa caagtattct      6420
     catccaggag caattttccc accagaggac attagctatg tctggaaaaa tgttttgttg      6480
     ccatgactgg agtgaggagg aggtgctacc agcatcttgt ggggaatgac cagggatgct      6540
     gaacatcctg cagtgcacaa gtcagcccaa tcacccacat aacagataat tatccagccc      6600
     caataccaag attgccaagg gtaggaggcc tgccaggact ttctctccct tgagtacaag      6660
     cttccttgaa ctgagggaca ccctgaagga aaagtgtggt cccaccccag tcatctctcc      6720
     cttccctgga gctccatctg tatgcctgta gtgcttaggc ccttaacctg gggtccagga      6780
     acccaccttc ccatgagact gcatgcagaa gtgatgatat gtgcacacat gacttcatta      6840
     cagggcattg gatattgata ttcatcaggt cagctggggc ccaagacacc actcttctgc      6900
     caacaggccg caatcctctg cattagagag agggtaaaga t                          6941
//


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