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EBI Dbfetch

ID   AY645743; SV 1; linear; genomic DNA; STD; HUM; 6956 BP.
XX
AC   AY645743;
XX
DT   19-JUL-2004 (Rel. 80, Created)
DT   17-JUN-2008 (Rel. 96, Last updated, Version 4)
XX
DE   Homo sapiens isolate Afr-Am022-1 MHC class Ib antigen (HLA-F) gene,
DE   HLA-F*010102 allele, complete cds.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-6956
RX   DOI; 10.1007/s00251-005-0076-z.
RX   PUBMED; 16570139.
RA   Pyo C.W., Williams L.M., Moore Y., Hyodo H., Li S.S., Zhao L.P.,
RA   Sageshima N., Ishitani A., Geraghty D.E.;
RT   "HLA-E, HLA-F, and HLA-G polymorphism: genomic sequence defines haplotype
RT   structure and variation spanning the nonclassical class I genes";
RL   Immunogenetics 58(4):241-251(2006).
XX
RN   [2]
RP   1-6956
RA   Pyo C.-W., Ishitani A., Moore Y.F., Geraghty D.E.;
RT   ;
RL   Submitted (04-JUN-2004) to the INSDC.
RL   Clinical Division, Fred Hutchinson Cancer Research Center, 1100 Fairview
RL   Ave. N., D4-100, Seattle, WA 98109-1024, USA
XX
DR   MD5; 7ce9c8485815a7f38252fa51dd68ad46.
DR   Ensembl-Gn; ENSG00000137403; homo_sapiens.
DR   Ensembl-Gn; ENSG00000204642; homo_sapiens.
DR   Ensembl-Gn; ENSG00000206509; homo_sapiens.
DR   Ensembl-Gn; ENSG00000229698; homo_sapiens.
DR   Ensembl-Gn; ENSG00000235220; homo_sapiens.
DR   Ensembl-Gn; ENSG00000237508; homo_sapiens.
DR   Ensembl-Tr; ENST00000259951; homo_sapiens.
DR   Ensembl-Tr; ENST00000334668; homo_sapiens.
DR   Ensembl-Tr; ENST00000359076; homo_sapiens.
DR   Ensembl-Tr; ENST00000376848; homo_sapiens.
DR   Ensembl-Tr; ENST00000376861; homo_sapiens.
DR   Ensembl-Tr; ENST00000383515; homo_sapiens.
DR   Ensembl-Tr; ENST00000420067; homo_sapiens.
DR   Ensembl-Tr; ENST00000434407; homo_sapiens.
DR   Ensembl-Tr; ENST00000440590; homo_sapiens.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..6956
FT                   /organism="Homo sapiens"
FT                   /chromosome="6"
FT                   /map="6p21.3"
FT                   /isolate="Afr-Am022-1"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gap             972..1339
FT                   /estimated_length=368
FT   gene            <1918..>4849
FT                   /gene="HLA-F"
FT                   /allele="HLA-F*010102"
FT   mRNA            join(<1918..1981,2112..2381,2627..2902,3473..3748,
FT                   3888..4004,4452..4484,4845..>4849)
FT                   /gene="HLA-F"
FT                   /allele="HLA-F*010102"
FT                   /product="MHC class Ib antigen"
FT   CDS             join(1918..1981,2112..2381,2627..2902,3473..3748,
FT                   3888..4004,4452..4484,4845..4849)
FT                   /codon_start=1
FT                   /gene="HLA-F"
FT                   /allele="HLA-F*010102"
FT                   /product="MHC class Ib antigen"
FT                   /db_xref="GOA:P30511"
FT                   /db_xref="HGNC:HGNC:4963"
FT                   /db_xref="IMGT/HLA:F*01:01:02:01"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR027648"
FT                   /db_xref="UniProtKB/Swiss-Prot:P30511"
FT                   /protein_id="AAT73226.1"
FT                   /translation="MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIA
FT                   VEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLR
FT                   RYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQI
FT                   TQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATL
FT                   RCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCH
FT                   VQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGS
FT                   YSQAAV"
XX
SQ   Sequence 6956 BP; 1536 A; 1664 C; 1782 G; 1606 T; 368 other;
     ggtaatggaa cagtgctaga gccactattc aggagtgaca gagtggtggg gactaaggga        60
     agaggagggc ctgagggatg agagggacgg agggaagggc tggagaagca ggaggtgagg       120
     agaaggagca gagggacaga atttgaaagc agcagaattc ttagctttaa acacattttt       180
     ttataaattt ttaatacatc catctacaga gcctagcagg gtgttccttg catttggcct       240
     ttaacaccgt atgtgggact gcctaaaaat taattgcttt ttctgctttt tttcaggttt       300
     aaaaaaatac taagtgttcc aataaaacat gcacaccact taggatgcgg atacttccta       360
     aaaacaggaa gtgcattagc actggtgagg ggcattgtga ctgcgttgaa cacttgcaac       420
     tttgaggtga atgaatgtat tggctcctgg ttgcaatata caatcacacg ttgtgctact       480
     ttgtattgtc aggagatgtc ctggactccc acagaaactc agggctatgg aatgaaggta       540
     attttagaat acaacaagag tcacagatac atagtctggg aaagcaaaac ttaggagctc       600
     tgagagttgt acaactgtaa tgcatttaga catatttata tatcaagggg ccaaagtaac       660
     attttttaca cataagattc ctgatcggtc gggcgcggtg gctcatgcct gtaatcgcag       720
     cactttggga ggccgaggcg ggaggatcac gaggtcagga gatcgagacc atcctggcta       780
     acacagtgaa acccgtctct acaaaaaaat tagccgggcg tggtggcggg catctgtagt       840
     ctcagctact cgggaggctg aagcagaaga atggcgtgaa cccgggaggc agagcttgca       900
     gtgagccgag atcgcgccac tgcactccag cctgggcggc agagagactc cgtctcaaaa       960
     aaaaaaaaaa annnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1020
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1080
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1140
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1320
     nnnnnnnnnn nnnnnnnnng aagaagaaga agaagaagaa actgtctcta caccttcatt      1380
     ctcaggacaa gttcattgtc tggcaccaag ctccttgggg tgaattttct tccaaaagag      1440
     tccggggagt ccaggtatgg aatgggaggc agaaagttca atcaagggac tgggatttcg      1500
     gaatgaataa tgaagggaga tggactgggt ccatgccgaa ggtttctccc tggtttctca      1560
     gcccccgggc gaagactcag ggagacattg agacacaccc tgcacaggag ggggaggggg      1620
     agggggaggg caaagtccca gggccccagg agtggctctc aagggctcag gccccgaggc      1680
     ggtgtctggg gttgggaggc tcagtattga gaattcccca tctccccaga gtttctcttt      1740
     ctctcccaac ccgtgtcagg tccttcttcc tggttactca taacgcggcc ccatttctca      1800
     ctcccattgg gcgtcgggtt tctagagaag ccaatcagtg tcgccgcagt tcccaggttc      1860
     taaagtccca cgcaccccgc gggactcata tttttcccag acgcggaggt tggggtcatg      1920
     gcgccccgaa gcctcctcct gctgctctca ggggccctgg ccctgaccga tacttgggca      1980
     ggtgagtgcg gggtccagag agaaacggcc tctgtgggga ggagtgaggg gcccgcccgg      2040
     tgggggcgca ggactcaggg agccgcgccc ggaggagggt ctggcgggtc tcagcccctc      2100
     ctcgccccca ggctcccact ccttgaggta tttcagcacc gctgtgtcgc ggcccggccg      2160
     cggggagccc cgctacatcg ccgtggagta cgtagacgac acgcaattcc tgcggttcga      2220
     cagcgacgcc gcgattccga ggatggagcc gcgggagccg tgggtggagc aagaggggcc      2280
     gcagtattgg gagtggacca cagggtacgc caaggccaac gcacagactg accgagtggc      2340
     cctgaggaac ctgctccgcc gctacaacca gagcgaggct ggtgagtgac cccggccggg      2400
     ggcgcaggtc acgaccaccc gccatccgcc acggaccgcc cgggtccctc agagtctccg      2460
     gatccgaaat ctaccccgag gcagcgggac ccgcccagac cctccacccg ggagagtccc      2520
     aggcgccttt acccaggttc attttcagtt taggccaaaa tccccgcggg ttgggcgggg      2580
     agggggcggg gctagctggg cggggctgac tgcggggacc ggctagggtc tcacaccctc      2640
     cagggaatga atggctgcga catggggccc gacggacgcc tcctccgcgg gtatcaccag      2700
     cacgcgtacg acggcaagga ttacatctcc ctgaacgagg acctgcgctc ctggaccgcg      2760
     gcggacaccg tggctcagat cacccagcgc ttctatgagg cagaggaata tgcagaggag      2820
     ttcaggacct acctggaggg cgagtgcctg gagttgctcc gcagatactt ggagaatggg      2880
     aaggagacgc tacagcgcgc aggtaccagg ggccatgggc gccttcccta tctcctgtag      2940
     atctcttggg atggcctcgc acaaggttgg gaggaaagtg ggcccaatgc taggatatcg      3000
     ccctccctct ggtcctgagt aggaagaatc ttcctggctt tcgagatccg gtaccagaga      3060
     gtgactgtga gagtccgccc tgctctctgg gacaattaag ggatgaaatg gagggaagac      3120
     agtccctgga ataccgatcc gcggtcccct ttgagccctc caacagcctt gggccccgtg      3180
     acttttctct caagttttgt tctctgcctc acactcaatg tgtttggggc tctgattcca      3240
     gtccctcggc ctccacttag gtcagggcca gaagtccctg ctccccgctc agagactcga      3300
     actttccaag gaataggaga ttttcccagg tgtctgtgtc caggctggtg tctgggttct      3360
     gtgctccctt ccccacccca ggtgtcctgt ccagtctcag gttggtcaca tgggtgctgc      3420
     tggggtttcc catgaggagt gcaaagtgcc tgaattttct gactcttctc agatcctcca      3480
     aaggcacacg ttgcccacca ccccatctct gaccatgagg ccaccctgag gtgctgggcc      3540
     ctgggcttct accctgcgga gatcacgctg acctggcagc gggatgggga ggaacagacc      3600
     caggacacag agcttgtgga gaccaggcct gcaggggatg gaaccttcca gaagtgggcc      3660
     gctgtggtgg tgccttctgg agaggaacag agatacacat gccatgtgca gcacgagggg      3720
     ctgccccagc ccctcatcct gagatggggt aaggagggag atgggtaaag aggggaatga      3780
     ggggtcatgt cttttctcag ggaaagcagg agcccttctg gagctcttca gcagggtcag      3840
     ggctgagcct ggagatcagg gcccctcacc ttcccttcct ttcccagagc agtctcccca      3900
     gcccaccatc cccatcgtgg gcatcgttgc tggccttgtt gtccttggag ctgtggtcac      3960
     tggagctgtg gtcgctgctg tgatgtggag gaagaagagc tcaggtagga aggggtgagg      4020
     agtggagtct gagttttctt gtcccactgg gggttgcaag ccccaagtag aagtgtgccc      4080
     tgcctcatta ctgggaagca ccatccacac tcatgggtct acccagcctg ggccctgtgt      4140
     gccagcacct actcatttgt aaggctcctg tgaaaatgaa ggacagattc ttcacttcga      4200
     tgattatggt ggtgatggga cctgatccca gcagtcacaa atcacagggg aaggtccctg      4260
     ctgatgacag acctcaggag ggcagttggt ccaggaccca catctgcttt cttcatattt      4320
     cttgatcctg ccctggatct acagttacac ttttctggaa acttctctgg gatcaaagac      4380
     taggggtttg ctctaggacc ttatggccct gcctcctttc tggcctctca caggacattt      4440
     tcttcccata gatagaaaca gagggagcta ctctcaggct gcaggtaaga tgaaggaggc      4500
     tgatccctga gattgttggg atattgtggt caggagccta tgagggagct cacccacccc      4560
     acagttcctc tagccacatc tgtgggctct gaccaggtcc tgtttttgtt ctaccccaat      4620
     cactgacagt gcccagggct ctggggtgtc tctcacagct aataaaggtg acactccagg      4680
     gcaggggccc tgatgtgagt ggggtgttgg ggggggaaca gaggggactc agctgtgcta      4740
     ttgggtttct ttgacttgga tgtcttgagc atgaaatggg ctatttagag tgttacctct      4800
     cactgtgact gatacgaatt tgttcatgaa tattttctct atagtgtgag acagcttcct      4860
     tgtgtgggac tgagaagcaa gatatcaatg tagcagaatt gcacttgtgc ctcacgaaca      4920
     tacataaatt ttaaaaataa agaataaaaa tatatctttt tatagataca ggtagatatg      4980
     tttttatagc atgcacgtaa atgtgtgtgt gtgtgtgtgt gaagagaaag agtgaataga      5040
     gagattaaga ttcttttaat ggtgaaaaga tatacatata tttggaatta gccagcttga      5100
     ctcagtttag gtgatcccaa ttttggtggc aacaaccaaa gcatcgtagt caggagccag      5160
     tcgaacatat gccttcctct ctccatcaga ctgaatcaga gtgttgactt tggccacatc      5220
     aatgtcacaa gcttcttcac agcctgtttg atctggtgct tgttggcttt aacatccaca      5280
     gtgaacacaa gtaggctgtt gttttctatc ttcttcacag cctactcagt ggtcagcgga      5340
     ctcttgatga taacatggtg gtcaagctta tttctcctgg gggtgctctt ccaaggatat      5400
     ttgggctgcc tccggagtca cagtgtcttg ggccgccgga aggtgggtga catgtggatc      5460
     ttgttttttt tgtggctgtg gacatctttc aacactgcct tcttggcctt gcaaagcctt      5520
     cgctttggct tcggctttag gaggggcagg agcttccttc ttcgttcttg gcaccatctt      5580
     atgaaaaggg tccagattaa gatttttgac tgagtcattc taaagtaagt tgcaagaccc      5640
     atgatactag accactaaat acttcatcac acacctccta agaataagaa ccaacattat      5700
     cacaccaaag aaaataaata attccataat attatttaaa gtccttttat gttcaaatat      5760
     ctccacttct ttcagtacat ttttgtacct attttttata gcttgttttc ttaaaatgtc      5820
     cactcgttgc ctttggttat gtttctttaa ttacctacaa tctataacaa tcaacccatc      5880
     ttttttcttt tagaatggca ttacctgttt cagagatgag gccaaatacc tgtggaatct      5940
     tctccacact gaatttatca tattatttcc cctgatgcct ttaacttttt tcctctaact      6000
     gctatgcctc ctaaggacct atgtagctct gggttaaaca tttggcagca atgtttacag      6060
     gaggagctgt gatcgcacat tcatcacatc aggaggcaca caaagcctag ggttaccagg      6120
     actctttctg accccataca gccaaattta tcctgacttc ccagagatgc agaaccatgg      6180
     gctgggtgtt tagtgggtat gagtgtgata ttctggcaat aggaggttct gccactctcc      6240
     ccattcctca cgagctttag gtccccatac cctgaggttc tgagctccag accttcaacc      6300
     atcaggccag gcccctccag acctagactc ccttcctgtc ttctccagcc ccactctgct      6360
     ttgtatctac ttccggatca ctttccctct acaggcccag ctcctgagtg tctctacctc      6420
     tcaaacaagt attctcatcc aggagcaatt ttcccaccag aggacattag ctatgtctgg      6480
     aaaaatgttt tgttgccatg actggagtga ggaggaggtg ctaccagcat cttgtgggga      6540
     atgaccaggg atgctgaaca tcctgcagtg cacaagtcag cccaatcacc cacataacag      6600
     ataattatcc agccccaata ccaagattgc caagggtagg aggcctgcca ggactttctc      6660
     tcccttgagt acaagcttcc ttgaactgag ggacaccctg aaggaaaagt gtggtcccac      6720
     cccagtcatc tctcccttcc ctggagctcc atctgtatgc ctgtagtgct taggccctta      6780
     acctggggtc caggaaccca ccttcccatg agactgcatg cagaagtgat gatatgtgca      6840
     cacatgactt cattacaggg cattggatat tgatattcat caggtcagct ggggcccaag      6900
     acaccactct tctgccaaca ggccgcaatc ctctgcatta gagagagggt aaagat          6956
//


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