Dbfetch
ID AY623048; SV 1; linear; genomic DNA; STD; HUM; 1964 BP. XX AC AY623048; XX DT 27-MAY-2004 (Rel. 80, Created) DT 12-DEC-2012 (Rel. 115, Last updated, Version 5) XX DE Homo sapiens MHC class I antigen (HLA-A) gene, HLA-A*2902 variant allele, DE exons 1 through 4 and partial cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-1964 RX DOI; 10.1016/j.humimm.2011.10.013. RX PUBMED; 22074999. RA Paximadis M., Mathebula T.Y., Gentle N.L., Vardas E., Colvin M., Gray C.M., RA Tiemessen C.T., Puren A.; RT "Human leukocyte antigen class I (A, B, C) and II (DRB1) diversity in the RT black and Caucasian South African population"; RL Hum. Immunol. 73(1):80-92(2012). XX RN [2] RP 1-1964 RA Puren A.J., Paximadis M., Mathebula T.Y.; RT "Distribution of HLA class I and II alleles in the South African population RT and its impact on the design of an epitope-based HIV-1 vaccine"; RL Unpublished. XX RN [3] RP 1-1964 RA Puren A.J., Paximadis M.; RT ; RL Submitted (12-MAY-2004) to the INSDC. RL AIDS Unit, National Institute for Communicable Diseases, 1 Modderfontein RL Rd., Sandringham, Johannesburg, Gauteng 2131, South Africa XX DR MD5; 4413f800d6f891e1e6ac2a9dffb28b38. DR IMGT/HLA; HLA-A*29:11; HLA01852. XX FH Key Location/Qualifiers FH FT source 1..1964 FT /organism="Homo sapiens" FT /chromosome="6" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>1964 FT /gene="HLA-A" FT /allele="HLA-A*2902 variant" FT mRNA join(<1..73,203..472,714..989,1590..>1865) FT /gene="HLA-A" FT /allele="HLA-A*2902 variant" FT /product="MHC class I antigen" FT CDS join(1..73,203..472,714..989,1590..>1865) FT /codon_start=1 FT /gene="HLA-A" FT /allele="HLA-A*2902 variant" FT /product="MHC class I antigen" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:Q6IUZ5" FT /protein_id="AAT35597.1" FT /translation="MAVMAPRTLLLLLLGALALTQTWAGSHSMRYFTTSVSRPGRGEPR FT FIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDLQTRNVKAQSQTDRANLGT FT LRGYYNQSEAGSHTIQMMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMA FT APITQRKWEAARVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHE FT ATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRY FT TCHVQHEGLPKPLTLRW" FT exon <1..73 FT /gene="HLA-A" FT /allele="HLA-A*2902 variant" FT /number=1 FT exon 203..472 FT /gene="HLA-A" FT /allele="HLA-A*2902 variant" FT /number=2 FT exon 714..989 FT /gene="HLA-A" FT /allele="HLA-A*2902 variant" FT /number=3 FT exon 1590..1865 FT /gene="HLA-A" FT /allele="HLA-A*2902 variant" FT /number=4 XX SQ Sequence 1964 BP; 363 A; 603 C; 640 G; 358 T; 0 other; atggccgtca tggcgccccg aaccctcctc ctgctactct tgggggccct ggccctgacc 60 cagacctggg cgggtgagtg cggggtcgtg gggaaaccgc ctctgcgggg agaagcaagg 120 ggcccgcccg gcggggacgc aggacccggg tagccgcgcc gggaggaggg tcgggtgggt 180 ctcagccact cctcgccccc aggctcccac tccatgaggt atttcaccac atccgtgtcc 240 cggcccggcc gcggggagcc ccgcttcatc gccgtgggct acgtggacga cacgcagttc 300 gtgcggtttg acagcgacgc cgcgagccag aggatggagc cgcgggcacc gtggatagag 360 caggaggggc cggagtattg ggacctgcag acacggaatg tgaaggccca gtcacagact 420 gaccgagcga acctggggac cctgcgcggc tactacaacc agagcgaggc cggtgagtga 480 ccccggcccg gggcgcaggt cacgacctct catcccccac ggacgggccg ggtcgcccac 540 agtctccggg tccgagatcc accccgaagc cgcgggaccc cgagaccctt gccccgggag 600 aggcccaggc gcctttaccc ggtttcattt tcagtttagg ccaaaaatcc ccccgggttg 660 gtcggggccg gacggggctc gggggactgg gctgaccgtg gggtcggggc caggttctca 720 caccatccag atgatgtatg gctgcgacgt ggggtcggac gggcgcttcc tccgcgggta 780 ccggcaggac gcctacgacg gcaaggatta catcgccttg aacgaggacc tgcgctcttg 840 gaccgcggcg gacatggcgg ctccgatcac ccagcgcaag tgggaggcgg cccgtgtggc 900 ggagcagttg agagcctacc tggagggcac gtgcgtggag tggctccgca gatacctgga 960 gaacgggaag gagacgctgc agcgcacggg taccgggggc cacggggcgc ctccctgatc 1020 gcctgtagat ctcccgggct ggcctcccac aaggagggga gacaattggg accaacacta 1080 gaatatcgcc ctccctctgg tcctgaggga gaggaatcct cctgggtttc cagatcctgt 1140 accagagagt gactctgagg ttccgccctg ctctctgaca caattaaggg ataaaatctc 1200 tgaaggaatg acgggaagac gatccctcga atactgatga gtggttccct ttgacacaca 1260 ccggcagcag ccttgggccc gtgacttttc ctctcaggcc ttgttctctg cttcacactc 1320 aatgtgtgtg ggggtctgag tccagcactt ctgagtccct cagcctccac tcaggtcagg 1380 accagaagtc gctgttccct cttcagggac tagaattttc cacggaatag gagattatcc 1440 caggtgcctg tgtccaggct ggtgtctggg ttctgtgctc ccttccccat cccaggtgtc 1500 ctgtccattc tcaagatagc cacatgtgtg ctggaggagt gtcccatgac agatgcaaaa 1560 tgcctgaatg ttctgactct tcctgacaga cgcccccaag acgcatatga ctcaccacgc 1620 tgtctctgac catgaggcca ccctgaggtg ctgggccctg agcttctacc ctgcggagat 1680 cacactgacc tggcagcggg atggggagga ccagacccag gacacggagc ttgtggagac 1740 caggcctgca ggggatggaa ccttccagaa gtgggcgtct gtggtggtgc cttctggaca 1800 ggagcagaga tacacctgcc atgtgcagca tgagggtctg cccaagcccc tcaccctgag 1860 atggggtaag gagggagatg ggggtgtcat gtcttttagg gaaagcagga gcctctctga 1920 cctttagcag ggtcagggcc cctcaccttc ccctcttttc ccag 1964 //