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EBI Dbfetch

ID   AY534170; SV 1; linear; genomic DNA; STD; ENV; 542 BP.
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AC   AY534170;
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DT   28-MAR-2004 (Rel. 79, Created)
DT   05-FEB-2005 (Rel. 82, Last updated, Version 2)
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DE   Uncultured cercozoan clone U58 18S ribosomal RNA gene, partial sequence.
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KW   .
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OS   uncultured cercozoan
OC   Eukaryota; Rhizaria; Cercozoa; environmental samples.
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RN   [1]
RP   1-542
RX   DOI; 10.1128/AEM.71.2.804-810.2005.
RX   PUBMED; 15691934.
RA   Paez-Rubio T., Viau E., Romero-Hernandez S., Peccia J.;
RT   "Source bioaerosol concentration and rRNA gene-based identification of
RT   microorganisms aerosolized at a flood irrigation wastewater reuse site";
RL   Appl. Environ. Microbiol. 71(2):804-810(2005).
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RN   [2]
RP   1-542
RA   Paez-Rubio T., Viau E.J., Peccia J.;
RT   ;
RL   Submitted (26-JAN-2004) to the INSDC.
RL   Civil and Environmental Engineering, Arizona State University, Engineering
RL   Center G-Wing, Room 252, Tempe, AZ 85287-5306, USA
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DR   MD5; 45bb9d2cc13f76f018c0871bc1b3dcfc.
DR   SILVA-SSU; AY534170.
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FH   Key             Location/Qualifiers
FH
FT   source          1..542
FT                   /organism="uncultured cercozoan"
FT                   /environmental_sample
FT                   /mol_type="genomic DNA"
FT                   /isolation_source="agricultural wastewater"
FT                   /clone="U58"
FT                   /note="amplified using universal primers 515F and 1392R"
FT                   /db_xref="taxon:175275"
FT   rRNA            <1..>542
FT                   /product="18S ribosomal RNA"
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SQ   Sequence 542 BP; 135 A; 102 C; 132 G; 172 T; 1 other;
     ggcngacgaa ccccctgtgc cacgccgcgg taattccgct ccaatagcgt atattaaagt        60
     tgctgcagtt aaaaagctcg tagttggatt tctggcttgg atatattttg ccggccacgg       120
     tttcgtgtgt tagtgcttga tattctggcc atccttccaa ggctattcat ccttcttcat       180
     tgaggtggtg agtggtattg gatcttttac tttgaaaaaa ttacagtgtt tcaagcaggc       240
     tttatgctat gaatacatta gcatggaata ataatttagg acttcggttc tattttgttg       300
     gtttctagga ctgaagtaat gattgatagg gatagttggg ggtgctagta ttcagcggcc       360
     agagtgaaat tctcggattc gctgaagact aacttatgcg aaagcattca ccaagggatg       420
     tcttctttaa tcaagaacga aagttgtgtg gggatcgaag acgatcagat accgtcgtag       480
     tctcaaccat aaactatgcc cactagggat gagtgaacgt tgccttttcg acttctattc       540
     gc                                                                      542
//


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