spacer

EBI Dbfetch

ID   AM945965; SV 1; linear; genomic DNA; STD; HUM; 646 BP.
XX
AC   AM945965;
XX
DT   11-MAR-2008 (Rel. 95, Created)
DT   26-APR-2012 (Rel. 112, Last updated, Version 2)
XX
DE   Homo sapiens partial HLA-C pseudogene, HLA-C*07 variant GAR0307N allele,
DE   exons 2-3
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-646
RA   Blasczyk R.;
RT   ;
RL   Submitted (09-MAR-2008) to the INSDC.
RL   Blasczyk R., Institute for Transfusion Medicine, Hannover Medical School,
RL   Carl-Neuberg-Str. 1, Hannover, 30625, GERMANY.
XX
RN   [2]
RX   DOI; 10.1111/j.1399-0039.2011.01786.x.
RX   PUBMED; 22007928.
RA   Badrinath S., Blasczyk R., Bade-Doeding C.;
RT   "Non-expression of HLA-C*07:55N is caused by a premature stop codon in exon
RT   3";
RL   Tissue Antigens 79(2):139-139(2012).
XX
DR   MD5; c4028809f165f3ba278e80b8c6978c80.
DR   IMGT/HLA; C*07:55N; HLA03298.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..646
FT                   /organism="Homo sapiens"
FT                   /map="6p21.3"
FT                   /isolate="MHHZ-00020178"
FT                   /mol_type="genomic DNA"
FT                   /identified_by="Peter Horn"
FT                   /tissue_type="peripheral blood"
FT                   /db_xref="taxon:9606"
FT   CDS             join(<1..270,371..>646)
FT                   /pseudo
FT                   /codon_start=3
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*07 variant GAR0307N"
FT   exon            1..270
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*07 variant GAR0307N"
FT                   /number=2
FT   gap             271..370
FT                   /estimated_length=unknown
FT   exon            371..646
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*07 variant GAR0307N"
FT                   /number=3
XX
SQ   Sequence 646 BP; 105 A; 174 C; 198 G; 69 T; 100 other;
     gctcccactc catgaggtat ttcgacaccg ccgtgtcccg gcccggccgc ggagagcccc        60
     gcttcatctc agtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg       120
     cgagtccgag aggggagccg cgggcgccgt gggtggagca ggaggggccg gagtattggg       180
     accgggagac acagaactac aagcgccagg cacaggctga ccgagtgagc ctgcggaacc       240
     tgcgcggcta ctacaaccag agcgaggacg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       360
     nnnnnnnnnn ggtctcacac cctccagagg atgtatggct gcgacctggg gcccgacggg       420
     cgcctcctcc gcgggtagga ccagtccgcc tacgacggca aggattacat cgccctgaac       480
     gaggacctgc gctcctggac cgccgcggac accgcggctc agatcaccca gcgcaagttg       540
     gaggcggccc gtgcggcgga gcagctgaga gcctacctgg agggcacgtg cgtggagtgg       600
     ctccgcagat acctggagaa cgggaaggag acgctgcagc gcgcag                      646
//


spacer
spacer