ID AM921681; SV 1; linear; genomic DNA; STD; ENV; 521 BP.
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AC AM921681;
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DT 05-DEC-2007 (Rel. 94, Created)
DT 18-JUN-2008 (Rel. 96, Last updated, Version 2)
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DE Uncultured archaeon partial mcrA gene for methyl-coenzyme M reductase
DE subunit A, clone DC_clone-mcrA-1
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KW .
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OS uncultured archaeon
OC Archaea; environmental samples.
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RN [1]
RP 1-521
RA Scanlan P.D.;
RT ;
RL Submitted (03-DEC-2007) to the INSDC.
RL Scanlan P.D., Microbiology Department, University College Cork, Cork City,
RL IRELAND.
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RN [2]
RX DOI; 10.1186/1471-2180-8-79.
RX PUBMED; 18492229.
RA Scanlan P.D., Shanahan F., Marchesi J.R.;
RT "Human methanogen diversity and incidence in healthy and diseased colonic
RT groups using mcrA gene analysis";
RL BMC Microbiol. 8:79-79(2008).
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DR MD5; b46531cb13bb8d47f0893392a2a14d25.
DR EuropePMC; PMC2408590; 18492229.
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FH Key Location/Qualifiers
FH
FT source 1..521
FT /organism="uncultured archaeon"
FT /host="Homo sapiens"
FT /environmental_sample
FT /mol_type="genomic DNA"
FT /country="Ireland"
FT /isolation_source="host faecal sample"
FT /clone_lib="mcrA gene clone library from Ulcerative colitis
FT individuals"
FT /clone="DC_clone-mcrA-1"
FT /db_xref="taxon:115547"
FT CDS complement(<1..>521)
FT /codon_start=1
FT /transl_table=11
FT /gene="mcrA"
FT /product="methyl-coenzyme M reductase subunit A"
FT /db_xref="GOA:A9JQQ9"
FT /db_xref="InterPro:IPR008924"
FT /db_xref="InterPro:IPR009047"
FT /db_xref="UniProtKB/TrEMBL:A9JQQ9"
FT /protein_id="CAP53915.1"
FT /translation="LADMVQSTREYPDDPARAALETVALGAIIFDQFYLGSYMSGGVGF
FT TQYATAAYTDNILEDYVYWAVDLIKSQYGGLCKSKPSMDLLEKLGTEVNTYALEMYEKY
FT PAAMESHFGGSQRATVAAASTGIACAMATGNADFGVNGWYLSMLQHKERHGRLGFYGYD
FT LQDQCGSANS"
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SQ Sequence 521 BP; 136 A; 121 C; 128 G; 136 T; 0 other;
aatgagttag cagaaccgca ctgatcctgt aagtcgtatc catagaatcc gagacgtccg 60
tgcctttctt tatgctggag catagagagg taccatccgt ttacaccgaa gtcggcgttt 120
ccggttgcca ttgcacaagc gataccggtt gaagcggctg caactgtagc acgctgggat 180
ccaccgaagt gagattccat agctgcagga tatttctcat acatctcaag agcgtatgtg 240
ttaacctcag taccgagttt ctctaagaga tccattgaag gtttgctctt gcagagaccg 300
ccgtactggg atttgattaa gtcaacagcc cagtagacat agtcttcaag gatgttatct 360
gtgtatgctg cagtagcgta ctgtgtgaat ccgacaccac cagacatgta tgatccaagg 420
taaaactgat cgaagatgat tgcaccgaga gctacagttt caagagctgc tcttgcaggg 480
tcatctgggt attcccttgt agactgaacc atatcagcga g 521
//