Dbfetch
ID AM712907; SV 1; linear; genomic DNA; STD; HUM; 2057 BP. XX AC AM712907; XX DT 25-MAY-2007 (Rel. 91, Created) DT 17-JUN-2008 (Rel. 96, Last updated, Version 2) XX DE Homo sapiens partial HLA-A gene for MHC class I antigen, HLA-A*02new DE allele, exons 1-5 XX KW HLA-A gene; HLA-A*02new allele; human leucocyte antigen A; KW major histocompatibility complex; MHC class I antigen. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-2057 RA Dormoy A.; RT ; RL Submitted (21-MAY-2007) to the INSDC. RL Dormoy A., Laboratoire HLA, Etablissement Francais du Sang - Alsace, 10 rue RL Spielmann, 67000, FRANCE. XX RN [2] RA Dormoy A., Leisenbach R.; RT "The new HLA-A*02 allele has 2 silent nucleotides changes from A*02010101 RT allele at positions 240 where T->G(codon 56(GGT(Gly)->GGG(Gly))and 477 RT where A->C (codon 136 GCA(Ala)->GCG(Ala))"; RL Unpublished. XX DR MD5; 1c6735d3d98484d63541315282dfabca. DR IMGT/HLA; HLA-A*02:01:17; HLA03095. XX FH Key Location/Qualifiers FH FT source 1..2057 FT /organism="Homo sapiens" FT /chromosome="6" FT /mol_type="genomic DNA" FT /PCR_primers="fwd_name: P5' Ala T-9, fwd_seq: FT ctgctactctcgggggct, rev_name: P3' intron 6A, rev_seq: FT cccacagaasatgtggctag" FT /db_xref="taxon:9606" FT CDS join(<1..26,157..426,669..944,1545..1820,1920..>2057) FT /codon_start=2 FT /gene="HLA-A" FT /allele="HLA-A*02new" FT /product="MHC class I antigen" FT /function="antigen presenting molecule" FT /db_xref="GOA:A5I8L1" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:A5I8L1" FT /protein_id="CAN85194.1" FT /translation="LALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFD FT SDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQ FT RMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQ FT LRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEIT FT LTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLR FT WEPSSQPTIPIVGIIAGLVLFGAVITGAVVAAVMWRRKSSGGEGVKG" FT exon <1..26 FT /gene="HLA-A" FT /allele="HLA-A*02new" FT /number=1 FT intron 27..156 FT /gene="HLA-A" FT /allele="HLA-A*02new" FT /number=1 FT exon 157..426 FT /gene="HLA-A" FT /allele="HLA-A*02new" FT /number=2 FT variation 323 FT /gene="HLA-A" FT /allele="HLA-A*02010101" FT /replace="t" FT /compare=AJ555412.1 FT /note="silent" FT intron 427..668 FT /gene="HLA-A" FT /allele="HLA-A*02new" FT /number=2 FT exon 669..944 FT /gene="HLA-A" FT /allele="HLA-A*02new" FT /number=3 FT variation 802 FT /gene="HLA-A" FT /allele="HLA-A*02010101" FT /replace="g" FT /compare=AJ555412.1 FT /note="silent" FT intron 945..1544 FT /gene="HLA-A" FT /allele="HLA-A*02new" FT /number=3 FT exon 1545..1820 FT /gene="HLA-A" FT /allele="HLA-A*02new" FT /number=4 FT intron 1821..1919 FT /gene="HLA-A" FT /allele="HLA-A*02new" FT /number=4 FT exon 1920..>2057 FT /gene="HLA-A" FT /allele="HLA-A*02new" FT /number=5 XX SQ Sequence 2057 BP; 392 A; 611 C; 676 G; 378 T; 0 other; tctggccctg acccagacct gggcgggtga gtgcggggtc gggagggaaa cggcctctgt 60 ggggagaagc aacgggcccg cctggcgggg gcgcaggacc cgggaagccg cgccgggagg 120 agggtcgggc gggtctcagc cactcctcgt ccccaggctc tcactccatg aggtatttct 180 tcacatccgt gtcccggccc ggccgcgggg agccccgctt catcgcagtg ggctacgtgg 240 acgacacgca gttcgtgcgg ttcgacagcg acgccgcgag ccagaggatg gagccgcggg 300 cgccgtggat agagcaggag gggccggagt attgggacgg ggagacacgg aaagtgaagg 360 cccactcaca gactcaccga gtggacctgg ggaccctgcg cggctactac aaccagagcg 420 aggccggtga gtgaccccgg cccggggcgc aggtcacgac ctctcatccc ccacggacgg 480 gccaggtcgc ccacagtctc cgggtccgag atccgccccg aagccgcggg accccgagac 540 ccttgccccg ggagaggccc aggcgccttt acccggtttc attttcagtt taggccaaaa 600 atccccccag gttggtcggg gcgggggcgg ggctcggggg accgggctga ccgcggggtc 660 cgggccaggt tctcacaccg tccagaggat gtatggctgc gacgtggggt cggactggcg 720 cttcctccgc gggtaccacc agtacgccta cgacggcaag gattacatcg ccctgaaaga 780 ggacctgcgc tcttggaccg cagcggacat ggcagctcag accaccaagc acaagtggga 840 ggcggcccat gtggcggagc agttgagagc ctacctggag ggcacgtgcg tggagtggct 900 ccgcagatac ctggagaacg ggaaggagac gctgcagcgc acgggtacca ggggccacgg 960 ggcgcctccc tgatcgcctg tagatctccc gggctggcct cccacaagga ggggagacaa 1020 ttgggaccaa cactagaata tcgccctccc tctggtcctg agggagagga atcctcctgg 1080 gtttccagat cctgtaccag agagtgactc tgaggttccg ccctgctctc tgacacaatt 1140 aagggataaa atctctgaag gaatgacggg aagacgatcc ctcgaatact gatgagtggt 1200 tccctttgac acacacaggc agcagccttg ggcccgtgac ttttcctctc aggccttgtt 1260 ctctgcttca cactcaatgt gtgtgggggt ctgagtccag cacttctgag tccttcagcc 1320 tccactcagg tcaggaccag aagtcgctgt tccctcttca gggactagaa ttttccacgg 1380 aataggagat tatcccaggt gcctgtgtcc aggctggtgt ctgggttctg tgctcccttc 1440 cccatcccag gtgtcctgtc cattctcaag atagccacat gtgtgctgga ggagtgtccc 1500 atgacagatg caaaatgcct gaatgatctg actcttcctg acagacgccc ccaaaacgca 1560 tatgactcac cacgctgtct ctgaccatga agccaccctg aggtgctggg ccctgagctt 1620 ctaccctgcg gagatcacac tgacctggca gcgggatggg gaggaccaga cccaggacac 1680 ggagctcgtg gagaccaggc ctgcagggga tggaaccttc cagaagtggg cggctgtggt 1740 ggtgccttct ggacaggagc agagatacac ctgccatgtg cagcatgagg gtttgcccaa 1800 gcccctcacc ctgagatggg gtaaggaggg agacgggggt gtcatgtctt ttagggaaag 1860 caggagcctc tctgaccttt agcagggtca gggcccctca ccttcccctc ttttcccaga 1920 gccgtcttcc cagcccacca tccccatcgt gggcatcatt gctggcctgg ttctctttgg 1980 agctgtgatc actggagctg tggtcgctgc tgtgatgtgg aggaggaaga gctcaggtgg 2040 ggaaggggtg aagggtg 2057 //