Dbfetch
ID AM413001; SV 1; linear; genomic DNA; STD; HUM; 995 BP. XX AC AM413001; XX DT 04-DEC-2006 (Rel. 90, Created) DT 17-JUN-2008 (Rel. 96, Last updated, Version 2) XX DE Homo sapiens partial HLA-A gene for MHC class I antigen, HLA-A*03new DE allele, exons 2-4 XX KW HLA-A gene; HLA-A*03new allele; human leucocyte antigen A; KW major histocompatibility complex; MHC class I antigen. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-995 RA Dormoy A.; RT ; RL Submitted (27-NOV-2006) to the INSDC. RL Dormoy A., Laboratoire HLA, Etablissement Francais du Sang - Alsace, 10 rue RL Spielmann, 67000, FRANCE. XX RN [2] RA Dormoy A., Froelich N.; RT "The HLA-A*03 new allele is identical to the A*03010101 current allele RT except a deletion of 27 nucleotides leading to a change in reading frame."; RL Unpublished. XX DR MD5; 608114ebdef5c68afd4269823460541e. DR IMGT/HLA; HLA-A*03:36N; HLA03119. XX FH Key Location/Qualifiers FH FT source 1..995 FT /organism="Homo sapiens" FT /chromosome="6" FT /mol_type="genomic DNA" FT /PCR_primers="fwd_name: P5' intron 1A(C93), fwd_seq: FT ggagccgcgccgggac, rev_name: P3' intron 4A, rev_seq: FT ggaaggtgaggggccctga" FT /db_xref="taxon:9606" FT CDS join(<1..243,344..619,720..>995) FT /codon_start=3 FT /gene="HLA-A" FT /allele="HLA-A*03new" FT /product="MHC class I antigen" FT /function="antigen presenting molecule" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:A0ZXY8" FT /protein_id="CAL85627.1" FT /translation="SHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRME FT PRAPWIEQEGPEYWDQETDRVDLGTLRGYYNQSEAGSHTIQIMYGCDVGSDGRFLRGYR FT QDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLE FT NGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVE FT TRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW" FT exon 1..243 FT /gene="HLA-A" FT /allele="HLA-A*03new" FT /number=2 FT variation 190^191 FT /gene="HLA-A" FT /allele="HLA-A*03010101" FT /replace="acggaatgtgaaggcccagtcacagac" FT /compare=U32184.1 FT gap 244..343 FT /estimated_length=unknown FT exon 344..619 FT /gene="HLA-A" FT /allele="HLA-A*03new" FT /number=3 FT gap 620..719 FT /estimated_length=unknown FT exon 720..995 FT /gene="HLA-A" FT /allele="HLA-A*03new" FT /number=4 XX SQ Sequence 995 BP; 159 A; 241 C; 277 G; 118 T; 200 other; gctcccactc catgaggtat ttcttcacat ccgtgtcccg gcccggccgc ggggagcccc 60 gcttcatcgc cgtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg 120 cgagccagag gatggagccg cgggcgccgt ggatagagca ggaggggccg gagtattggg 180 accaggagac tgaccgagtg gacctgggga ccctgcgcgg ctactacaac cagagcgagg 240 ccgnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 300 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnngttctca caccatccag 360 ataatgtatg gctgcgacgt ggggtcggac gggcgcttcc tccgcgggta ccggcaggac 420 gcctacgacg gcaaggatta catcgccctg aacgaggacc tgcgctcttg gaccgcggcg 480 gacatggcgg ctcagatcac caagcgcaag tgggaggcgg cccatgaggc ggagcagttg 540 agagcctacc tggatggcac gtgcgtggag tggctccgca gatacctgga gaacgggaag 600 gagacgctgc agcgcacggn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 660 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnna 720 cccccccaag acacatatga cccaccaccc catctctgac catgaggcca ccctgaggtg 780 ctgggccctg ggcttctacc ctgcggagat cacactgacc tggcagcggg atggggagga 840 ccagacccag gacacggagc tcgtggagac caggcctgca ggggatggaa ccttccagaa 900 gtgggcggct gtggtggtgc cttctggaga ggagcagaga tacacctgcc atgtgcagca 960 tgagggtctg cccaagcccc tcaccctgag atggg 995 //