Dbfetch
ID AK156464; SV 1; linear; mRNA; HTC; MUS; 1389 BP. XX AC AK156464; XX DT 06-SEP-2005 (Rel. 85, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 10) XX DE Mus musculus activated spleen cDNA, RIKEN full-length enriched library, DE clone:F830022N04 product:CD84 antigen, full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1389 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (30-MAR-2004) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; c5aeb96449fb59f561ce5335a7b6531e. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Tissues were provided by Dr. John Todd (Dept. of Medical Genetics CC Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome CC Trust/MRC building Addenbrookes Hospital Cambridge) whose CC assistance we gratefully acknowledge. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=F830022N04 XX FH Key Location/Qualifiers FH FT source 1..1389 FT /organism="Mus musculus" FT /strain="NOD" FT /mol_type="mRNA" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="F830022N04" FT /tissue_type="activated spleen" FT /db_xref="taxon:10090" FT CDS 28..450 FT /codon_start=1 FT /transl_table=1 FT /note="CD84 antigen (MGD|MGI:1336885 GB|AF043445, evidence: FT BLASTN, 99%, match=407)" FT /note="putative" FT /db_xref="GOA:Q18PI6" FT /db_xref="InterPro:IPR003599" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="MGI:MGI:1336885" FT /db_xref="UniProtKB/Swiss-Prot:Q18PI6" FT /protein_id="BAE33721.1" FT /translation="MAQRHLWIWFLCLQTWSEAAGKDADPMVMNGILGESVTFLLNIQE FT PKKIDNIAWTSQSSVAFIKPGVNKAEVTITQGTYKGRIEIIDQKYDLVIRDLRMEDAGT FT YKADINEENEETITKIYYLHIYRKLWQHGALDLLLI" XX SQ Sequence 1389 BP; 453 A; 300 C; 247 G; 389 T; 0 other; gctcagaaga ctggagtctg actggacatg gcccagcgcc atctgtggat ctggttcctt 60 tgcctacaaa cctggtctga agcagcagga aaagatgcag acccgatggt aatgaatggg 120 attcttgggg agtcagttac tttcctctta aatattcaag aaccaaagaa aattgacaac 180 attgcctgga cttctcaatc atctgttgct tttataaaac caggagtcaa taaagctgaa 240 gttaccataa cccagggcac ttataaagga cgaatagaaa tcatagatca gaagtatgac 300 ctggtcatta gagacctgag gatggaagat gcaggaactt acaaagcaga catcaatgaa 360 gagaatgagg aaaccatcac caagatctac taccttcata tctaccgtaa gttatggcag 420 cacggggcct tggatttact tttgatttga agatttatga tctaaaccac acccatattt 480 ctgataacag agtttcctaa ctcttcttat ccttataatt acataagcac atcagtactt 540 ataaaggtct aactttactt ctggccttga cagactttag ctgtaatctg ttttgcagca 600 gaatttgtcc tctgttcttt gttttccttt cctataaaat gtcaataatc atattaatca 660 atttgtaagc attattatga cattctagta agaaactata cgcagagtgg tctttataag 720 gcttctgctt ttaagataat tacagaatgc ataggaaaat gcaaagaact atgaaaggat 780 gtgttctgtg cccttctctt gccctctcct ctgttatact agatccaaac tcttagtctc 840 atcccccgtc ttatacagac cttctagggt agcctttctt cattgtctct cctgattcca 900 aggagataaa ataagcagat cctggcacac acctttgatt ccagcactca ggaggcaaag 960 acagaaggat ctctatgagt tcaaggctag cttggtcttc agagaaagtt ccagaacagc 1020 caagactaac aaaaagaaac cctttctcaa accaacctcc catccccatc ctcacccccc 1080 aaaaactact agaatgaaag aaaaaaaata ccaagacaca aaatgaacag tgtctgagga 1140 actcttattt ctgtaagtat taatactttc agaaatgcag aacagtgttc aaggtcaaaa 1200 acagaaaatt ggaactttct tggaatgtgc cagcacttac ttaggaatgg aatcacttat 1260 attcctataa aatttaatca catatatagc accggacagc attaatcaca tatatagcac 1320 cggacatcat aagcaaggta gtagtgaagc accatcccaa cattttcttg tctcagttct 1380 gcagggcag 1389 //