Dbfetch

ID   AK151601; SV 1; linear; mRNA; HTC; MUS; 1133 BP.
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AC   AK151601;
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DT   06-SEP-2005 (Rel. 85, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 11)
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DE   Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
DE   library, clone:I830032B16 product:CD48 antigen, full insert sequence.
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KW   CAP trapper; HTC; HTC_FLI.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
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RN   [1]
RP   1-1133
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (30-MAR-2004) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
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RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science, e1252229 309(5740):1559-1563(2005).
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RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science, e1252229 309(5740):1564-1566(2005).
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RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
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RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
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RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
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DR   MD5; 7ddfcfffaffa5d93f4f689342291bb31.
DR   Ensembl-Gn; ENSMUSG00000015355; mus_musculus.
DR   Ensembl-Gn; MGP_129S1SvImJ_G0016769; mus_musculus_129s1svimj.
DR   Ensembl-Gn; MGP_AJ_G0016748; mus_musculus_aj.
DR   Ensembl-Gn; MGP_AKRJ_G0016714; mus_musculus_akrj.
DR   Ensembl-Gn; MGP_BALBcJ_G0016709; mus_musculus_balbcj.
DR   Ensembl-Gn; MGP_C3HHeJ_G0016533; mus_musculus_c3hhej.
DR   Ensembl-Gn; MGP_C57BL6NJ_G0017171; mus_musculus_c57bl6nj.
DR   Ensembl-Gn; MGP_CASTEiJ_G0016114; mus_musculus_casteij.
DR   Ensembl-Gn; MGP_CBAJ_G0016507; mus_musculus_cbaj.
DR   Ensembl-Gn; MGP_DBA2J_G0016614; mus_musculus_dba2j.
DR   Ensembl-Gn; MGP_FVBNJ_G0016611; mus_musculus_fvbnj.
DR   Ensembl-Gn; MGP_LPJ_G0016685; mus_musculus_lpj.
DR   Ensembl-Gn; MGP_NODShiLtJ_G0016638; mus_musculus_nodshiltj.
DR   Ensembl-Gn; MGP_NZOHlLtJ_G0017207; mus_musculus_nzohlltj.
DR   Ensembl-Gn; MGP_PWKPhJ_G0015899; mus_musculus_pwkphj.
DR   Ensembl-Gn; MGP_WSBEiJ_G0016175; mus_musculus_wsbeij.
DR   Ensembl-Tr; ENSMUST00000068584; mus_musculus.
DR   Ensembl-Tr; MGP_129S1SvImJ_T0023515; mus_musculus_129s1svimj.
DR   Ensembl-Tr; MGP_AJ_T0023478; mus_musculus_aj.
DR   Ensembl-Tr; MGP_AKRJ_T0023447; mus_musculus_akrj.
DR   Ensembl-Tr; MGP_BALBcJ_T0023457; mus_musculus_balbcj.
DR   Ensembl-Tr; MGP_C3HHeJ_T0023261; mus_musculus_c3hhej.
DR   Ensembl-Tr; MGP_C57BL6NJ_T0023967; mus_musculus_c57bl6nj.
DR   Ensembl-Tr; MGP_CASTEiJ_T0022807; mus_musculus_casteij.
DR   Ensembl-Tr; MGP_CBAJ_T0023208; mus_musculus_cbaj.
DR   Ensembl-Tr; MGP_DBA2J_T0023326; mus_musculus_dba2j.
DR   Ensembl-Tr; MGP_FVBNJ_T0023339; mus_musculus_fvbnj.
DR   Ensembl-Tr; MGP_LPJ_T0023432; mus_musculus_lpj.
DR   Ensembl-Tr; MGP_NODShiLtJ_T0023303; mus_musculus_nodshiltj.
DR   Ensembl-Tr; MGP_NZOHlLtJ_T0024006; mus_musculus_nzohlltj.
DR   Ensembl-Tr; MGP_PWKPhJ_T0022529; mus_musculus_pwkphj.
DR   Ensembl-Tr; MGP_WSBEiJ_T0022823; mus_musculus_wsbeij.
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CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Tissues were provided by David A. Hume ( Depts. of Biochemistry
CC   and Microbiology/Parasitology Institute for Molecular Bioscience
CC   University of Queensland Brisbane,Q 4072 Australia ) whose
CC   assistance we gratefully acknowledge.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=I830032B16
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FH   Key             Location/Qualifiers
FH
FT   source          1..1133
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="I830032B16"
FT                   /cell_type="macrophage"
FT                   /tissue_type="bone marrow"
FT                   /db_xref="taxon:10090"
FT   CDS             31..753
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="CD48 antigen (MGD|MGI:88339 GB|AK084984, evidence:
FT                   BLASTN, 99%, match=1132)"
FT                   /note="putative"
FT                   /db_xref="GOA:P18181"
FT                   /db_xref="InterPro:IPR003599"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR013106"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR033548"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="MGI:MGI:88339"
FT                   /db_xref="PDB:2PTT"
FT                   /db_xref="PDB:2PTV"
FT                   /db_xref="UniProtKB/Swiss-Prot:P18181"
FT                   /protein_id="BAE30541.1"
FT                   /translation="MCFIKQGWCLVLELLLLPLGTGFQGHSIPDINATTGSNVTLKIHK
FT                   DPLGPYKRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKG
FT                   TYYMRVLRETENELKITLEVFDPVPKPSIEINKTEASTDSCHLRLSCEVKDQHVDYTWY
FT                   ESSGPFPKKSPGYVLDLIVTPQNKSTFYTCQVSNPVSSKNDTVYFTLPCDLARSSGVCW
FT                   TATWLVVTTLIIHRILLT"
FT   regulatory      1113..1118
FT                   /note="putative"
FT                   /regulatory_class="polyA_signal_sequence"
FT   polyA_site      1133
FT                   /note="putative"
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SQ   Sequence 1133 BP; 348 A; 253 C; 218 G; 314 T; 0 other;
     gagtgttctg gggaagcttc tctaagtatt atgtgcttca taaaacaggg atggtgtctg        60
     gtcctggaac tgctactgct gcccttggga actggatttc aaggtcattc aataccagat       120
     ataaatgcca ccaccggcag caatgtaacc ctgaaaatcc ataaggaccc acttggacca       180
     tataaacgta tcacctggct tcatactaaa aatcagaaga ttttagagta caactataat       240
     agtacaaaga caatcttcga gtctgaattt aaaggcaggg tttatcttga agaaaacaat       300
     ggtgcacttc atatctctaa tgtccggaaa gaggacaaag gtacctacta catgagagtg       360
     ctgcgtgaaa ctgagaacga gttgaagata accctggaag tatttgatcc tgtgcccaag       420
     ccttccatag aaatcaataa gactgaagcg tcgactgatt cctgtcacct gaggctatcg       480
     tgtgaggtaa aggaccagca tgttgactat acttggtatg agagctcggg acctttcccc       540
     aaaaagagtc caggatatgt gctcgatctc atcgtcacac cacagaacaa gtctacattt       600
     tacacctgcc aagtcagcaa tcctgtaagc agcaagaacg acacagtgta cttcactcta       660
     ccttgtgatc tagccagatc ttctggagta tgttggactg caacttggct agtggtcaca       720
     acactcatca ttcacaggat cctgttaacc tgacaagaac tcttctcacc caagaaggca       780
     acttggaagc acagagtctt gccttcatcc ctagcagtgt tcctagccag cgaagcaact       840
     ctggctctat tggacaaagg aaaatgtgtt actgaacgtc tgcgagagtt tgcatgcatg       900
     ctctatgaaa caagcacagg accttgtaca gtgctccacc actgacctgt gtgcccagtc       960
     ctttacaaag atttcaaatc agccttttaa aaactgtgca taatatctaa ttttatatac      1020
     cctagttgtt tcccaacata tattaaagat aaatgcattc tttttaccaa aatgtgacta      1080
     tattattttc atgttttcat atctcttttt aaaataaatt cttttaaaaa act             1133
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