ID AK151601; SV 1; linear; mRNA; HTC; MUS; 1133 BP.
XX
AC AK151601;
XX
DT 06-SEP-2005 (Rel. 85, Created)
DT 07-OCT-2010 (Rel. 106, Last updated, Version 11)
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DE Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
DE library, clone:I830032B16 product:CD48 antigen, full insert sequence.
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KW CAP trapper; HTC; HTC_FLI.
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OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
XX
RN [1]
RP 1-1133
RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT ;
RL Submitted (30-MAR-2004) to the INSDC.
RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL :http://www.osc.riken.jp/
XX
RN [2]
RX PUBMED; 16141072.
RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG Science Group (Genome Network Project Core Group)
RA ;
RT "The Transcriptional Landscape of the Mammalian Genome";
RL Science, e1252229 309(5740):1559-1563(2005).
XX
RN [3]
RX DOI; 10.1126/science.1112009.
RX PUBMED; 16141073.
RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG Network Project Core Group) and the FANTOM Consortium
RA ;
RT "Antisense Transcription in the Mammalian Transcriptome";
RL Science, e1252229 309(5740):1564-1566(2005).
XX
RN [4]
RX PUBMED; 12466851.
RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG I and II Team
RA ;
RT "Analysis of the mouse transcriptome based on functional annotation of
RT 60,770 full-length cDNAs";
RL Nature 420(6915):563-573(2002).
XX
RN [5]
RX PUBMED; 11217851.
RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG Consortium
RA ;
RT "Functional annotation of a full-length mouse cDNA collection";
RL Nature 409(6821):685-690(2001).
XX
RN [6]
RX DOI; 10.1016/S0076-6879(99)03004-9.
RX PUBMED; 10349636.
RA Carninci P., Hayashizaki Y.;
RT "High-efficiency full-length cDNA cloning";
RL Meth. Enzymol. 303:19-44(1999).
XX
RN [7]
RX DOI; 10.1101/gr.145100.
RX PUBMED; 11042159.
RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT full-length cDNA libraries for rapid discovery of new genes";
RL Genome Res. 10(10):1617-1630(2000).
XX
RN [8]
RX DOI; 10.1101/gr.152600.
RX PUBMED; 11076861.
RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT pipeline with 384 multicapillary sequencer";
RL Genome Res. 10(11):1757-1771(2000).
XX
DR MD5; 7ddfcfffaffa5d93f4f689342291bb31.
DR Ensembl-Gn; ENSMUSG00000015355; mus_musculus.
DR Ensembl-Gn; MGP_129S1SvImJ_G0016769; mus_musculus_129s1svimj.
DR Ensembl-Gn; MGP_AJ_G0016748; mus_musculus_aj.
DR Ensembl-Gn; MGP_AKRJ_G0016714; mus_musculus_akrj.
DR Ensembl-Gn; MGP_BALBcJ_G0016709; mus_musculus_balbcj.
DR Ensembl-Gn; MGP_C3HHeJ_G0016533; mus_musculus_c3hhej.
DR Ensembl-Gn; MGP_C57BL6NJ_G0017171; mus_musculus_c57bl6nj.
DR Ensembl-Gn; MGP_CASTEiJ_G0016114; mus_musculus_casteij.
DR Ensembl-Gn; MGP_CBAJ_G0016507; mus_musculus_cbaj.
DR Ensembl-Gn; MGP_DBA2J_G0016614; mus_musculus_dba2j.
DR Ensembl-Gn; MGP_FVBNJ_G0016611; mus_musculus_fvbnj.
DR Ensembl-Gn; MGP_LPJ_G0016685; mus_musculus_lpj.
DR Ensembl-Gn; MGP_NODShiLtJ_G0016638; mus_musculus_nodshiltj.
DR Ensembl-Gn; MGP_NZOHlLtJ_G0017207; mus_musculus_nzohlltj.
DR Ensembl-Gn; MGP_PWKPhJ_G0015899; mus_musculus_pwkphj.
DR Ensembl-Gn; MGP_WSBEiJ_G0016175; mus_musculus_wsbeij.
DR Ensembl-Tr; ENSMUST00000068584; mus_musculus.
DR Ensembl-Tr; MGP_129S1SvImJ_T0023515; mus_musculus_129s1svimj.
DR Ensembl-Tr; MGP_AJ_T0023478; mus_musculus_aj.
DR Ensembl-Tr; MGP_AKRJ_T0023447; mus_musculus_akrj.
DR Ensembl-Tr; MGP_BALBcJ_T0023457; mus_musculus_balbcj.
DR Ensembl-Tr; MGP_C3HHeJ_T0023261; mus_musculus_c3hhej.
DR Ensembl-Tr; MGP_C57BL6NJ_T0023967; mus_musculus_c57bl6nj.
DR Ensembl-Tr; MGP_CASTEiJ_T0022807; mus_musculus_casteij.
DR Ensembl-Tr; MGP_CBAJ_T0023208; mus_musculus_cbaj.
DR Ensembl-Tr; MGP_DBA2J_T0023326; mus_musculus_dba2j.
DR Ensembl-Tr; MGP_FVBNJ_T0023339; mus_musculus_fvbnj.
DR Ensembl-Tr; MGP_LPJ_T0023432; mus_musculus_lpj.
DR Ensembl-Tr; MGP_NODShiLtJ_T0023303; mus_musculus_nodshiltj.
DR Ensembl-Tr; MGP_NZOHlLtJ_T0024006; mus_musculus_nzohlltj.
DR Ensembl-Tr; MGP_PWKPhJ_T0022529; mus_musculus_pwkphj.
DR Ensembl-Tr; MGP_WSBEiJ_T0022823; mus_musculus_wsbeij.
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CC cDNA library was prepared and sequenced in Mouse Genome
CC Encyclopedia Project of Genome Exploration Research Group in Riken
CC Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC Division of Experimental Animal Research in Riken contributed to
CC prepare mouse tissues.
CC Tissues were provided by David A. Hume ( Depts. of Biochemistry
CC and Microbiology/Parasitology Institute for Molecular Bioscience
CC University of Queensland Brisbane,Q 4072 Australia ) whose
CC assistance we gratefully acknowledge.
CC Please visit our web site for further details.
CC URL:http://www.osc.riken.jp/
CC URL:http://fantom.gsc.riken.jp/
CC clone information is available at:
CC http://fantom.gsc.riken.jp/3/db/annotate/
CC main.cgi?masterid=I830032B16
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FH Key Location/Qualifiers
FH
FT source 1..1133
FT /organism="Mus musculus"
FT /strain="C57BL/6J"
FT /mol_type="mRNA"
FT /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT /clone="I830032B16"
FT /cell_type="macrophage"
FT /tissue_type="bone marrow"
FT /db_xref="taxon:10090"
FT CDS 31..753
FT /codon_start=1
FT /transl_table=1
FT /note="CD48 antigen (MGD|MGI:88339 GB|AK084984, evidence:
FT BLASTN, 99%, match=1132)"
FT /note="putative"
FT /db_xref="GOA:P18181"
FT /db_xref="InterPro:IPR003599"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR013106"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR033548"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="MGI:MGI:88339"
FT /db_xref="PDB:2PTT"
FT /db_xref="PDB:2PTV"
FT /db_xref="UniProtKB/Swiss-Prot:P18181"
FT /protein_id="BAE30541.1"
FT /translation="MCFIKQGWCLVLELLLLPLGTGFQGHSIPDINATTGSNVTLKIHK
FT DPLGPYKRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKG
FT TYYMRVLRETENELKITLEVFDPVPKPSIEINKTEASTDSCHLRLSCEVKDQHVDYTWY
FT ESSGPFPKKSPGYVLDLIVTPQNKSTFYTCQVSNPVSSKNDTVYFTLPCDLARSSGVCW
FT TATWLVVTTLIIHRILLT"
FT regulatory 1113..1118
FT /note="putative"
FT /regulatory_class="polyA_signal_sequence"
FT polyA_site 1133
FT /note="putative"
XX
SQ Sequence 1133 BP; 348 A; 253 C; 218 G; 314 T; 0 other;
gagtgttctg gggaagcttc tctaagtatt atgtgcttca taaaacaggg atggtgtctg 60
gtcctggaac tgctactgct gcccttggga actggatttc aaggtcattc aataccagat 120
ataaatgcca ccaccggcag caatgtaacc ctgaaaatcc ataaggaccc acttggacca 180
tataaacgta tcacctggct tcatactaaa aatcagaaga ttttagagta caactataat 240
agtacaaaga caatcttcga gtctgaattt aaaggcaggg tttatcttga agaaaacaat 300
ggtgcacttc atatctctaa tgtccggaaa gaggacaaag gtacctacta catgagagtg 360
ctgcgtgaaa ctgagaacga gttgaagata accctggaag tatttgatcc tgtgcccaag 420
ccttccatag aaatcaataa gactgaagcg tcgactgatt cctgtcacct gaggctatcg 480
tgtgaggtaa aggaccagca tgttgactat acttggtatg agagctcggg acctttcccc 540
aaaaagagtc caggatatgt gctcgatctc atcgtcacac cacagaacaa gtctacattt 600
tacacctgcc aagtcagcaa tcctgtaagc agcaagaacg acacagtgta cttcactcta 660
ccttgtgatc tagccagatc ttctggagta tgttggactg caacttggct agtggtcaca 720
acactcatca ttcacaggat cctgttaacc tgacaagaac tcttctcacc caagaaggca 780
acttggaagc acagagtctt gccttcatcc ctagcagtgt tcctagccag cgaagcaact 840
ctggctctat tggacaaagg aaaatgtgtt actgaacgtc tgcgagagtt tgcatgcatg 900
ctctatgaaa caagcacagg accttgtaca gtgctccacc actgacctgt gtgcccagtc 960
ctttacaaag atttcaaatc agccttttaa aaactgtgca taatatctaa ttttatatac 1020
cctagttgtt tcccaacata tattaaagat aaatgcattc tttttaccaa aatgtgacta 1080
tattattttc atgttttcat atctcttttt aaaataaatt cttttaaaaa act 1133
//