Dbfetch
ID AK088815; SV 1; linear; mRNA; HTC; MUS; 2099 BP. XX AC AK088815; XX DT 19-DEC-2002 (Rel. 74, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 14) XX DE Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length DE enriched library, clone:E430026K15 product:lymphocyte antigen 9, full DE insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2099 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-APR-2002) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; 1f48657c90c60df869641e94e411c43e. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=E430026K15 XX FH Key Location/Qualifiers FH FT source 1..2099 FT /organism="Mus musculus" FT /strain="NOD" FT /mol_type="mRNA" FT /dev_stage="2 days neonate" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="E430026K15" FT /cell_type="thymic cells" FT /tissue_type="thymus" FT /db_xref="taxon:10090" FT CDS 37..1671 FT /codon_start=1 FT /transl_table=1 FT /note="lymphocyte antigen 9 (MGD|MGI:96885 GB|NM_008534, FT evidence: BLASTN, 99%, match=1940)" FT /note="putative" FT /db_xref="GOA:Q8C2D4" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="MGI:MGI:96885" FT /db_xref="UniProtKB/TrEMBL:Q8C2D4" FT /protein_id="BAC40591.1" FT /translation="MADLKRYWCDWALSPLSENPRMSQQQIFSPILWIPLLFLLMEKLQ FT KPQIIVESVTPSDTDSCTFTLICTVKGTKDSVQYSWTREDTHLNTYDGSHTLRVSQSVC FT DPDLPYTCKAWNPVSQNSSQPVRIWQFCTGASRRKTAAGKTVVGILGEPVTLPLEFRAT FT RATKNVVWVFNTSVISQERRGAATADSRRKPKGSEERRVRTSDQDQSLKISQLKMEDAG FT PYHAYVCSEASRDPSVRHFTLLVYKRLEKPSVTNSPVHMMNGICKVVLTCSVDGGGNNV FT TYTWMPLQNKAVMSQGKSHLNVSWESGEHLPNFTCTAHNPVSNSSSQFSSGTICSGPER FT NKRFWLLLLLVLLLLMLIGGYFILRKKKQCSSLATRYRQAEVPAEIPETPTGHGQFSVL FT SQRYEKLDMSAKTTRHQPTPTSDTSSESSATTEEDDEKTRIHSTANSRNQVYDLVTHQD FT IAHALAYEGQVEYEAITPYDKVDESMDEEDMAYIQVSLNVQGETPLPQKKEDSNTIYCS FT VQKPKKTAQTPQQDAESPETPTYENFT" FT regulatory 2084..2089 FT /note="putative" FT /regulatory_class="polyA_signal_sequence" FT polyA_site 2099 FT /note="putative" XX SQ Sequence 2099 BP; 584 A; 528 C; 515 G; 472 T; 0 other; gatctccttt aatttgaaat ctggaagtac accatcatgg cggatctaaa gagatattgg 60 tgtgactggg ctctaagtcc actctctgaa aatccaagaa tgagtcagca gcagatattt 120 tctcccattc tttggattcc tctcctcttc ctactcatgg agaagctcca gaagcctcag 180 atcatcgtgg aatctgtgac cccatccgat actgattcct gcaccttcac cctaatctgc 240 actgtaaagg ggacaaagga cagtgtccag tacagctgga cccgagagga cacccattta 300 aatacatacg atggaagcca caccctcagg gtttcccaga gtgtctgtga ccccgaccta 360 ccctatacct gcaaagcctg gaatccagtc agccaaaaca gctcccaacc tgtccgcatc 420 tggcaattct gcacaggagc ctccagaaga aaaacagcag cggggaagac tgtggtagga 480 atcctgggag agccagtgac cctgcccttg gaatttcggg ccactcgggc cacaaagaat 540 gttgtctggg tgtttaacac gtcggttatc agccaagaac ggagaggagc agcaacagcg 600 gattctcgcc gtaagcccaa aggttctgaa gaaaggaggg tgaggacctc tgaccaggac 660 caatccctga agatcagcca gctgaagatg gaggacgcgg gcccctacca tgcctatgtg 720 tgctcagagg cctcccgaga ccccagtgtg agacatttca ccttgcttgt ctacaagaga 780 ctggagaagc ccagtgtcac caacagtcct gtgcacatga tgaacggaat ctgcaaggtt 840 gtcctgacct gttcagtgga cggtggtgga aacaatgtga catacacatg gatgcctcta 900 caaaacaaag ctgtcatgtc ccaagggaag tcgcacctca atgtctcctg ggaaagtggt 960 gaacacctgc ccaacttcac atgcacagcc cataaccctg tcagcaacag ctccagccag 1020 ttttcttctg ggaccatctg ttcaggccct gagagaaaca agaggttttg gctcctgctc 1080 ctcctggttt tgctcttgtt gatgctcatt ggcggttact tcattttgag gaaaaagaag 1140 cagtgttcgt ctttggccac caggtacaga caagcggagg tcccagctga aataccagaa 1200 accccaactg gccatggaca attttctgtg ctctcccaac ggtatgagaa actagacatg 1260 tctgctaaga ccaccaggca tcagcctaca cccacctcag ataccagctc tgagagcagc 1320 gcaacaacag aagaggatga cgaaaagacc agaattcaca gcactgctaa tagtagaaat 1380 caggtgtatg acttggtcac ccatcaggac attgcacatg ccttggccta tgaggggcaa 1440 gtagaatatg aagcaatcac tccatatgat aaagtggatg agtctatgga tgaagaggac 1500 atggcatata tacaagtgtc cctgaatgtg cagggagaga ccccacttcc tcagaagaaa 1560 gaagactcaa atacaatcta ctgctctgtg cagaagccta aaaagacggc acaaacacca 1620 cagcaagacg ctgagtctcc tgaaacccct acctatgaaa atttcacctg aagggaaaag 1680 cggctgctac ttctggggtg aggatttgga gaaaaacaga catcataaat cctcctgttt 1740 ctgcagaaag gacacatcgg aatttcctgc catggcttag actagcctga atttgatgcc 1800 ttcctcttct tgtcatcctc cttaccccat gagcccattc acaggtcagg cagagtctcc 1860 ttggagccta caggctttga acaccctgcc tttggatctc tttttcttat ctggactgcc 1920 ttgtctgcct cagtggggga ggatgcactt agtcctgttg ggacttgatg tgccagggtg 1980 ggttggtacc gtctctgaga agaaggggag atgggaattg ggggagggat gtgagggagg 2040 gatgggaggc ctgtggtcaa tatgtaaagt gaataaataa actaataaag aaaaaaatt 2099 //