Dbfetch
ID AK084984; SV 1; linear; mRNA; HTC; MUS; 1171 BP. XX AC AK084984; XX DT 19-DEC-2002 (Rel. 74, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 14) XX DE Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, DE clone:D430021J02 product:CD48 antigen, full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1171 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-APR-2002) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; 675c0f78714006c13d2f94ac6bf72447. DR Ensembl-Gn; ENSMUSG00000015355; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0016769; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0016748; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0016714; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0016709; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0016533; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0017171; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0016114; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0016507; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0016614; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0016611; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0016685; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0016638; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0017207; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0015899; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0016175; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000068584; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0023515; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0023478; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0023447; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0023457; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0023261; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0023967; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0022807; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0023208; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0023326; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0023339; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0023432; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0023303; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0024006; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0022529; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0022823; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=D430021J02 XX FH Key Location/Qualifiers FH FT source 1..1171 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="13 days embryo" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="D430021J02" FT /tissue_type="lung" FT /db_xref="taxon:10090" FT CDS 69..791 FT /codon_start=1 FT /transl_table=1 FT /note="CD48 antigen (MGD|MGI:88339 GB|X53526, evidence: FT BLASTN, 99%, match=1153)" FT /note="putative" FT /db_xref="GOA:P18181" FT /db_xref="InterPro:IPR003599" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR013106" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR033548" FT /db_xref="InterPro:IPR036179" FT /db_xref="MGI:MGI:88339" FT /db_xref="PDB:2PTT" FT /db_xref="PDB:2PTV" FT /db_xref="UniProtKB/Swiss-Prot:P18181" FT /protein_id="BAC39328.1" FT /translation="MCFIKQGWCLVLELLLLPLGTGFQGHSIPDINATTGSNVTLKIHK FT DPLGPYKRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKG FT TYYMRVLRETENELKITLEVFDPVPKPSIEINKTEASTDSCHLRLSCEVKDQHVDYTWY FT ESSGPFPKKSPGYVLDLIVTPQNKSTFYTCQVSNPVSSKNDTVYFTLPCDLARSSGVCW FT TATWLVVTTLIIHRILLT" FT regulatory 1151..1156 FT /note="putative" FT /regulatory_class="polyA_signal_sequence" FT polyA_site 1171 FT /note="putative" XX SQ Sequence 1171 BP; 355 A; 265 C; 227 G; 324 T; 0 other; ggaagggcag gcgccctgac ttctcttaca gttgtctcca gtgttctggg gaagcttctc 60 taagtattat gtgcttcata aaacagggat ggtgtctggt cctggaactg ctactgctgc 120 ccttgggaac tggatttcaa ggtcattcaa taccagatat aaatgccacc accggcagca 180 atgtaaccct gaaaatccat aaggacccac ttggaccata taaacgtatc acctggcttc 240 atactaaaaa tcagaagatt ttagagtaca actataatag tacaaagaca atcttcgagt 300 ctgaatttaa aggcagggtt tatcttgaag aaaacaatgg tgcacttcat atctctaatg 360 tccggaaaga ggacaaaggt acctactaca tgagagtgct gcgtgaaact gagaacgagt 420 tgaagataac cctggaagta tttgatcctg tgcccaagcc ttccatagaa atcaataaga 480 ctgaagcgtc gactgattcc tgtcacctga ggctatcgtg tgaggtaaag gaccagcatg 540 ttgactatac ttggtatgag agctcgggac ctttccccaa aaagagtcca ggatatgtgc 600 tcgatctcat cgtcacacca cagaacaagt ctacatttta cacctgccaa gtcagcaatc 660 ctgtaagcag caagaacgac acagtgtact tcactctacc ttgtgatcta gccagatctt 720 ctggagtatg ttggactgca acttggctag tggtcacaac actcatcatt cacaggatcc 780 tgttaacctg acaagaactc ttctcaccca agaaggcaac ttggaagcac agagtcttgc 840 cttcatccct agcagtgttc ctagccagcg aagcaactct ggctctattg gacaaaggaa 900 aatgtgttac tgaacgtctg cgagagtttg catgcatgct ctatgaaaca agcacaggac 960 cttgtacagt gctccaccac tgacctgtgt gcccagtcct ttacaaagat ttcaaatcaa 1020 ccttttaaaa actgtgcata atatctaatt ttatataccc tagttgtttc ccaacatata 1080 ttaaagataa atgcattctt tttaccaaaa tgtgactata ttattttcat gttttcatat 1140 ctctttttaa aataaattct tttaaaaaac t 1171 //