Dbfetch

ID   AJ969671; SV 1; linear; genomic DNA; STD; HUM; 646 BP.
XX
AC   AJ969671;
XX
DT   11-MAY-2005 (Rel. 83, Created)
DT   05-MAR-2010 (Rel. 104, Last updated, Version 4)
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DE   Homo sapiens partial HLA-B27 gene for MHC class I antigen, HLA-B*2705
DE   silent variant allele, exons 2 and 3
XX
KW   HLA-B*2705 silent variant allele; HLA-B27 gene; human leucocyte antigen B;
KW   major histocompatibility complex; MHC class I antigen.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RP   1-646
RA   Heymann G.A.;
RT   ;
RL   Submitted (10-MAY-2005) to the INSDC.
RL   Heymann G.A., Institut fuer Transfusionsmedizin, Charite / Campus Virchow
RL   Klinikum, Augustenburger Platz 1, 13353 Berlin, GERMANY.
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RN   [2]
RA   Heymann G.A., Hoppe B., Schonemann C., Lassahn A., Salama A.;
RT   "New silent variant of HLA-B*2705 affecting typing by PCR-SSO";
RL   Tissue Antigens 66(6):702-703(2005).
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DR   MD5; 5a659f1fe8a72b8762105512b9554343.
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FH   Key             Location/Qualifiers
FH
FT   source          1..646
FT                   /organism="Homo sapiens"
FT                   /chromosome="6"
FT                   /mol_type="genomic DNA"
FT                   /country="Germany"
FT                   /sex="male"
FT                   /cell_type="lymphocytes"
FT                   /tissue_type="blood"
FT                   /db_xref="taxon:9606"
FT   mRNA            join(<1..270,371..>646)
FT                   /gene="HLA-B27"
FT                   /allele="B*2705var"
FT   CDS             join(<1..270,371..>646)
FT                   /codon_start=3
FT                   /gene="HLA-B27"
FT                   /allele="B*2705var"
FT                   /product="MHC class I antigen"
FT                   /function="antigen presenting molecule"
FT                   /db_xref="IMGT/HLA:B*27:05:09"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR037055"
FT                   /db_xref="UniProtKB/TrEMBL:Q50HP8"
FT                   /protein_id="CAI94608.1"
FT                   /translation="SHSMRYFHTSVSRPGRGEPRFITVGYVDDTLFVRFDSDAASPREE
FT                   PRAPWIEQEGPEYWDRETQICKAKAQTDREDLRTLLRYYNQSEAGSHTLQNMYGCDVGP
FT                   DGRLLRGYHQDAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGEC
FT                   VEWLRRYLENGKETLQRA"
FT   exon            1..270
FT                   /gene="HLA-B27"
FT                   /allele="B*2705var"
FT                   /number=2
FT   gap             271..370
FT                   /estimated_length=unknown
FT   exon            371..646
FT                   /gene="HLA-B27"
FT                   /allele="B*2705var"
FT                   /number=3
XX
SQ   Sequence 646 BP; 109 A; 172 C; 194 G; 71 T; 100 other;
     gctcccactc catgaggtat ttccacacct ccgtgtcccg gcccggccgc ggggagcccc        60
     gcttcatcac cgtgggctac gtggacgaca cgctgttcgt gaggttcgac agcgacgccg       120
     cgagtccgag agaggagccg cgggcgccgt ggatagagca ggaggggccg gagtattggg       180
     accgggagac acagatctgc aaagccaagg cacagactga ccgagaggac ctgcggaccc       240
     tgctccgcta ctacaaccag agcgaggccg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       360
     nnnnnnnnnn ggtctcacac cctccagaat atgtatggct gcgacgtggg gccggacggg       420
     cgcctcctcc gcgggtacca ccaggacgcc tacgacggca aggattacat cgccctgaac       480
     gaggacctga gctcctggac cgccgcggac acggcggctc agatcaccca gcgcaagtgg       540
     gaggcggccc gtgtggcgga gcagctgaga gcctacctgg agggcgagtg cgtggagtgg       600
     ctccgcagat acctggagaa cgggaaggag acgctgcagc gcgcgg                      646
//