Dbfetch

ID   AJ293507; SV 1; linear; genomic DNA; STD; HUM; 3303 BP.
XX
AC   AJ293507;
XX
DT   20-OCT-2000 (Rel. 65, Created)
DT   17-JUN-2008 (Rel. 96, Last updated, Version 3)
XX
DE   Homo sapiens HLA-A gene, not expressed, A*2901N allele, exons 1-8
XX
KW   A*2901N gene; not expressed.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-3303
RA   Blasczyk R.;
RT   ;
RL   Submitted (10-JUL-2000) to the INSDC.
RL   Blasczyk R., Department of Transfusion Medicine, Hannover Medical School,
RL   Carl-Neuberg-Str, 1, Hannover, 30625, GERMANY.
XX
RN   [2]
RA   Elsner H.A., Bernard G., Bernard A., Blasczyk R.;
RT   "The non-expression of A*2901N is caused by a defect splicing site in
RT   intron 4";
RL   Unpublished.
XX
DR   MD5; 497a11cff2fde28a5c500d529581c57b.
DR   IMGT/HLA; A*29:01:01:02N; HLA01406.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3303
FT                   /organism="Homo sapiens"
FT                   /chromosome="6p21"
FT                   /isolate="MHH-994726"
FT                   /mol_type="genomic DNA"
FT                   /country="Viet Nam"
FT                   /cell_line="GBnu29"
FT                   /db_xref="taxon:9606"
FT   mRNA            join(227..299,429..698,940..1215,1816..2091,2191..2307,
FT                   2748..2780,2923..2970,3140..3144)
FT                   /gene="HLA-A"
FT                   /note="A*2901N allele"
FT                   /note="defect splicing site in intron 4"
FT   CDS             join(227..299,429..698,940..1215,1816..2091,2191..2307,
FT                   2748..2780,2923..2970,3140..3144)
FT                   /pseudo
FT                   /gene="HLA-A"
FT                   /note="A*2901N allele"
FT                   /note="not expressed, defect splicing site in intron 4"
FT                   /db_xref="PSEUDO:CAC14174.1"
FT   exon            227..299
FT                   /gene="HLA-A"
FT                   /number=1
FT                   /note="A*2901N allele"
FT   intron          300..428
FT                   /gene="HLA-A"
FT                   /number=1
FT                   /note="A*2901N allele"
FT   exon            429..698
FT                   /gene="HLA-A"
FT                   /number=2
FT                   /note="A*2901N allele"
FT   intron          699..939
FT                   /gene="HLA-A"
FT                   /number=2
FT                   /note="A*2901N allele"
FT   exon            940..1215
FT                   /gene="HLA-A"
FT                   /number=3
FT                   /note="A*2901N allele"
FT   intron          1216..1815
FT                   /gene="HLA-A"
FT                   /number=3
FT                   /note="A*2901N allele"
FT   exon            1816..2091
FT                   /gene="HLA-A"
FT                   /number=4
FT                   /note="A*2901N allele"
FT   intron          2092..2190
FT                   /gene="HLA-A"
FT                   /number=4
FT                   /note="A*2901N allele"
FT   exon            2191..2307
FT                   /gene="HLA-A"
FT                   /number=5
FT                   /note="A*2901N allele"
FT   intron          2308..2747
FT                   /gene="HLA-A"
FT                   /number=5
FT                   /note="A*2901N allele"
FT   exon            2748..2780
FT                   /gene="HLA-A"
FT                   /number=6
FT                   /note="A*2901N allele"
FT   intron          2781..2922
FT                   /gene="HLA-A"
FT                   /number=6
FT                   /note="A*2901N allele"
FT   exon            2923..2970
FT                   /gene="HLA-A"
FT                   /number=7
FT                   /note="A*2901N allele"
FT   intron          2971..3139
FT                   /gene="HLA-A"
FT                   /number=7
FT                   /note="A*2901N allele"
FT   exon            3140..3144
FT                   /gene="HLA-A"
FT                   /number=8
FT                   /note="A*2901N allele"
XX
SQ   Sequence 3303 BP; 624 A; 947 C; 1013 G; 719 T; 0 other;
     gtatggattg gggagtccca gccttgggga ttccccaact ccgcagtttc ttttctccct        60
     ctgccaacct atgtagggtc cttcttcctg gatactcacg acgcggaccc agttctcact       120
     cccattgggt gtcgggtttc cagagaagcc aatcagtgtc gtcgcggtcg cggttctaaa       180
     gtccgcacgc acccaccggg actcagattc tccccagacg ccgaggatgg ccgtcatggc       240
     gccccgaacc ctcctcctgc tactcttggg ggccctggcc ctgacccaga cctgggcggg       300
     tgagtgcggg gtcgtgggga aaccgcctct gcggggagaa gcaaggggcc cgcccggcgg       360
     ggacgcagga cccgggtagc cgcgccggga ggagggtcgg gtgggtctca cccactcctc       420
     gcccccaggc tcccactcca tgaggtattt caccacatcc gtgtcccggc ccggccgcgg       480
     ggagccccgc ttcatcgccg tgggctacgt ggacgacacg cagttcgtgc ggtttgacag       540
     cgacgccgcg agccagagga tggagccgcg ggcaccgtgg atagagcagg aggggccgga       600
     gtattgggac ctgcagacac ggaatgtgaa ggcccagtca cagactgacc gagcgaacct       660
     ggggaccctg cgcggctact acaaccagag cgaggccggt gagtgacccc ggcccggggc       720
     gcaggtcacg acctctcatc ccccacggac gggccgggtc gcccacagtc tccgggtccg       780
     agatccaccc cgaagccgcg ggaccccgag acccttgccc cgggagaggc ccaggcgcct       840
     ttacccggtt tcattttcag tttaggccaa aaatcccccc gggttggtcg gggccggacg       900
     gggctcgggg gactgggctg accgtggggt cggggccagg ttctcacacc atccagatga       960
     tgtatggctg ccacgtgggg tcggacgggc gcttcctccg cgggtaccgg caggacgcct      1020
     acgacggcaa ggattacatc gccttgaacg aggacctgcg ctcttggacc gcggcggaca      1080
     tggcggctca gatcacccag cgcaagtggg aggcggcccg tgtggcggag cagttgagag      1140
     cctacctgga gggcacgtgc gtggagtggc tccgcagata cctggagaac gggaaggaga      1200
     cgctgcagcg cacgggtacc gggggccacg gggcgcctcc ctgatcgcct gtagatctcc      1260
     cgggctggcc tcccacaagg aggggagaca attgggacca acactagaat atcgccctcc      1320
     ctctggtcct gagggagagg aatcctcctg ggtttccaga tcctgtacca gagagtgact      1380
     ctgaggttcc gccctgctct ctgacacaat taagggataa aatctctgaa ggaatgacgg      1440
     gaagacgatc cctcgaatac tgatgagtgg ttccctttga cacacaccgg cagcagcctt      1500
     gggcccgtga cttttcctct caggccttgt tctctgcttc acactcaatg tgtgtggggg      1560
     tctgagtcca gcacttctga gtccctcagc ctccactcag gtcaggacca gaagtcgctg      1620
     ttccctcttc agggactaga attttccacg gaataggaga ttatcccagg tgcctgtgtc      1680
     caggctggtg tctgggttct gtgctccctt ccccatccca ggtgtcctgt ccattctcaa      1740
     gatagccaca tgtgtgctgg aggagtgtcc catgacagat gcaaaatgcc tgaatgttct      1800
     gactcttcct gacagacgcc cccaagacgc atatgactca ccacgctgtc tctgaccatg      1860
     aggccaccct gaggtgctgg gccctgagct tctaccctgc ggagatcaca ctgacctggc      1920
     agcgggatgg ggaggaccag acccaggaca cggagcttgt ggagaccagg cctgcagggg      1980
     atggaacctt ccagaagtgg gcgtctgtgg tggtgccttc tggacaggag cagagataca      2040
     cctgccatgt gcagcatgag ggtctgccca agcccctcac cctgagatgg gttaaggagg      2100
     gagatggggg tgtcatgtct tttagggaaa gcaggagcct ctctgacctt tagcagggtc      2160
     agggcccctc accttcccct cttttcccag agccgtcttc ccagcccacc atccccatcg      2220
     tgggcatcat tgctggccta gttctctttg gagctgtgtt cgctggagct gtggtcgctg      2280
     ctgtgaggtg gaggaggaag agctcaggtg gggtgaaggg atgaagggtg ggtctgagat      2340
     ttcttgtctc actgagggtt ccaagaccca ggtagaagtg tgccctgcct cgttactggg      2400
     aagcaccatc cacaattatg ggcctaccca gcctgggccc tgtgtgccag cacttactct      2460
     tttgtaaagc acctgttaaa atgaaggaca gatttatcac cttgattacg gcggtgatgg      2520
     gacctgatcc cagcagtcac aagtcacagg ggaaggtccc tgaggacctt caggagggcg      2580
     gttggtccag gacccacacc tgctttcttc atgtttcctg atcccgccct gggtctgcag      2640
     tcacacattt ctggaaactt ctctgaggtc caagacttgg aggttcctct aggaccttaa      2700
     ggccctggct cctttctggt atctcacagg acattttctt cccacagata gaaaaggagg      2760
     gagctactct caggctgcaa gtaagtatga aggaggctga tgcctgaggt ccttgggata      2820
     ttgtgtttgg gagcccgtgg gggagctcac ccaccccaca attcctcctc tagccacatc      2880
     ttctgtggga tctgaccagg ttctgttttt gtcctacccc aggcagtgac agtgcccagg      2940
     gctctgatat gtctctcaca gcttgtaaag gtgagagcct ggagggcctg atgtgtgttg      3000
     ggtgttgggc ggaacagtgg acgcagctgt gctatggggt ttctttgcat tggatgtatt      3060
     gagcatgcga tgggctgttt aaagtgtgac tcctcactgt gacagatacg aatttgttca      3120
     tgaatatttt tttctatagt gtgagacagc tgccttgtgt gggactgaga ggcaagattt      3180
     gttcctgccc ttccctttgt gacttgaaga accctgactt tgtttctgca aaggcacctg      3240
     catgtgtctg tgttcttgta ggcataatgt gaggaggtgg ggagaccacc ccacccccat      3300
     gtc                                                                    3303
//