Dbfetch

Dbfetch

ID   AJ251433; SV 1; linear; mRNA; STD; VRT; 1002 BP.
XX
AC   AJ251433;
XX
DT   03-JUL-2000 (Rel. 64, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Oncorhynchus mykiss mRNA for MHC class II alpha chain (onmy-DAA*03 gene)
XX
KW   antigen; DAA*03 allele; major histocompatibility complex;
KW   MHC class II alpha chain; onmy-DAA gene.
XX
OS   Oncorhynchus mykiss (rainbow trout)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes;
OC   Salmonidae; Salmoninae; Oncorhynchus.
XX
RN   [1]
RP   1-1002
RA   Stet R.J.M.;
RT   ;
RL   Submitted (03-DEC-1999) to the INSDC.
RL   Stet R.J.M., Department of Animal Sciences, Cell Biology and Immunology
RL   Group, Marijkeweg 40, 6709 PG Wageningen, NETHERLANDS.
XX
RN   [2]
RA   Grimholt U., Getahun A., Hermsen T., Stet R.J.M.;
RT   "The major histocompatibility class II alpha chain in salmonid fishes";
RL   Unpublished.
XX
DR   MD5; 205a4205bcf1cb3a2b28dba6575bebb5.
DR   IMGT/LIGM; AJ251433.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1002
FT                   /organism="Oncorhynchus mykiss"
FT                   /mol_type="mRNA"
FT                   /tissue_lib="gill"
FT                   /db_xref="taxon:8022"
FT   CDS             55..777
FT                   /gene="onmy-DAA"
FT                   /product="MHC class II alpha chain"
FT                   /note="DAA*03 allele"
FT                   /db_xref="GOA:Q9MX25"
FT                   /db_xref="InterPro:IPR001003"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR014745"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="UniProtKB/TrEMBL:Q9MX25"
FT                   /protein_id="CAB96452.1"
FT                   /translation="MKTSMIVLILCCQVYAEDKVLHIDLAITGCSDSDGVDMYGLDGEE
FT                   LWYADFNKKEGVMALPPFADQMTFPGFYEQAVGNLGICKANLAVAIKASKNPPEAIAPP
FT                   HSSIYPRDDVELGVENTLICHVSAFHPAPVRVRWTRNNQNVTEGVRLSTPYPNTDFTLN
FT                   QFSSLTFTPEEGDIYGCTVEHKALTEPLTRIWEPEVSQPSVAPAVFCGVGLTLGLLGVA
FT                   TGTFFPYRSLLWLRALCS"
FT   sig_peptide     55..105
FT                   /gene="onmy-DAA*03"
FT   mat_peptide     106..774
FT                   /gene="onmy-DAA*03"
FT                   /product="MHC class II alpha chain"
XX
SQ   Sequence 1002 BP; 259 A; 237 C; 249 G; 257 T; 0 other;
     ggcacgagta actgtacagt acagtcctcc tgaatgtctc tctgttgtct gaacatgaag        60
     acctctatga ttgtcctcat cctctgctgt caggtgtatg cagaagacaa agttctgcat       120
     attgatttag ctattactgg atgcagtgat tcagatggag tggatatgta tggactggat       180
     ggtgaagagt tgtggtacgc agacttcaac aaaaaggagg gagtgatggc tctgcctccg       240
     tttgcagatc agatgacctt ccctggattt tatgaacagg ctgtaggtaa tctggggata       300
     tgcaaagcaa acctggccgt agctataaaa gcttccaaga acccaccaga ggcaatagcc       360
     cctcctcaca gcagcatcta ccccagggat gatgtggaac tgggggtgga gaacaccctc       420
     atctgccacg tcagtgcgtt ccaccctgca cctgtcagag tcaggtggac caggaacaat       480
     cagaatgtga ccgagggagt gcgtctcagc accccctacc ccaacactga tttcaccctc       540
     aaccagttct ccagtctgac cttcacccca gaggagggag acatctatgg ctgtactgtg       600
     gagcacaagg cccttactga gcccctgaca cggatctggg aacctgaggt gagccagccc       660
     agtgtggctc ctgctgtgtt ctgtggtgtg ggtctgactc tggggctgct gggagtggct       720
     accggaacat tcttcccata taggtcacta ctttggctaa gagccctttg ctcttaggtg       780
     cgttattgtg aacgggcttt cttaggatat tttcctgagg actctcagca tatcaggtgt       840
     gtctcaacag tctctcaaga ctccagactc aaatcactaa ctatgatgaa gtgaataact       900
     tattgtgctg acatcacaag gtcatgtgat gtagtgaatg ccaatttgca aaaaaaatgt       960
     ctgataatga aaataaaggt ttgcttttct ccaaaaaaaa aa                         1002
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