Dbfetch

ID   AH002898; SV 2; linear; genomic DNA; STD; HUM; 2350 BP.
XX
AC   AH002898; M21391-M21394;
XX
DT   26-APR-2017 (Rel. 132, Created)
DT   26-APR-2017 (Rel. 132, Last updated, Version 1)
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DE   Human (clone H1A) MHC class II HLA-SX3-beta pseudogene.
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KW   .
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RP   1-2350
RX   DOI; 10.1007/BF00372291.
RX   PUBMED; 3015787.
RA   Kappes D.J., Strominger J.L.;
RT   "Structure and evolution of the HLA class II SX beta gene";
RL   Immunogenetics 24(1):1-7(1986).
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DR   MD5; dd25396a72730288fa708a8854db4e37.
DR   IMGT/HLA; HLA-DPB2*01:01:01; HLA14837.
XX
CC   On or before Apr 24, 2017 this sequence version replaced M21391.1,
CC   M21392.1, M21393.1, M21394.1, AH002898.1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2350
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /haplotype="DR4/4, DQw3/w3, DP3/4"
FT                   /cell_type="B-cell"
FT                   /db_xref="taxon:9606"
FT   gene            274..1735
FT                   /pseudo
FT                   /gene="MHC II HLA-SX3-beta"
FT   CDS             join(274..373,497..760,880..1160,1285..1395,1716..1735)
FT                   /pseudo
FT                   /codon_start=1
FT                   /gene="MHC II HLA-SX3-beta"
FT                   /product="MHC class II HLA-SX3-beta"
FT   exon            274..373
FT                   /pseudo
FT                   /gene="MHC II HLA-SX3-beta"
FT                   /number=1
FT   gap             389..488
FT                   /estimated_length=unknown
FT   exon            497..760
FT                   /pseudo
FT                   /gene="MHC II HLA-SX3-beta"
FT                   /number=2
FT   gap             772..871
FT                   /estimated_length=unknown
FT   exon            880..1160
FT                   /pseudo
FT                   /gene="MHC II HLA-SX3-beta"
FT                   /number=3
FT   gap             1172..1271
FT                   /estimated_length=unknown
FT   exon            1285..1395
FT                   /pseudo
FT                   /gene="MHC II HLA-SX3-beta"
FT                   /number=4
FT   exon            1716..1735
FT                   /pseudo
FT                   /gene="MHC II HLA-SX3-beta"
FT                   /number=5
XX
SQ   Sequence 2350 BP; 498 A; 504 C; 516 G; 532 T; 300 other;
     gttaaaatga gtgtcagtgt tctccatctg tcctcgtaac agcatcactg gctctatatt        60
     gtcagatctt taatactaac tttctgccca gtgagcaatg actcatacaa agctcagtgc       120
     ccattggttc ttttctcaga gtctgtccaa tcctggggtc acgggggact acttgggttc       180
     atggtctcta atatttcaga caggagctcc ctttaatgag ttcttgtttt cctgactgca       240
     gctctcttca ttctgccaac cttttccaac tccatgatga tcctgcaggt ttcagggggc       300
     ccctggacag tggctctgac agcattactg atggtgctgc tcatatctgt ggtccagagc       360
     agggccactc caggtaagag cagagctgnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       420
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       480
     nnnnnnnnct tcacagagaa ttccgtctac caggaacggc aggaatgcta tgcgttcaat       540
     gggactcagc gcgttgtgga cgggctcatc tacaaccggg aggaatacgt gcattttgac       600
     agcgcagtgg gggagttcct agcagtgatg gagctggggc ggcccatagg cgagtacttc       660
     aatagccaga aggactttat ggaacggaag cgagccgagg tggacaaggt gtgcagacac       720
     aagtacgagc tgatggagcc actcatccgg cagcgccgag gtgagggctg gnnnnnnnnn       780
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       840
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nactcctagt ccagcctagg gtgaacatcc       900
     cccctccaag aaggagcccc ggcagcacca cgacctgctt gtctaccacg tgacagattt       960
     ctacccaggc agcattcaag tccgatgctt cctgaatgga caggaggaaa cagctggggt      1020
     catgtccacc aagctgatcc gtaatgaaga ctggaccttc cagatcctgg agatgctgga      1080
     aatgatcccc cagcagggaa acatctacac ctgccaagtg aagcacccca gcctggacag      1140
     tcctgtcacc gtggagtgga gtgagggtct gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nctgttcttc ctagaggcac agtctgattt tgtgcagagc aagatgctga      1320
     caggagccag gggcttcatg ctggggctca tcatctgtgg agtggacatc ttcacgcaca      1380
     gaaggagcaa gaaaggtgag aaatcctgtg aggtgaccga tacccacctt tctcctgact      1440
     tgctcaccct tcttccatga tgaggggctg agacaaaaaa gcaatgccag agagcttgct      1500
     gaaatcacat agtcaggaaa caaagacagc ttctaaggag agaggaatcc cagcctggca      1560
     tcttaatgca gccagatgca taaggtcgca gttactcagg ctcctgcaga gcgtccattg      1620
     agtgatgggc aatggaagtg tgatggaaac atttctctaa ttgtctgagg tggtttcagt      1680
     agctgaatac attctctttc ttcctttcat ttcagttcaa caaggatctg cataaacagg      1740
     caatattcct gctttgattt ccttgttggg ggagttacag gaggacataa gtcctttctg      1800
     tacattgtga cactgagctc ctctaggaag agagtctcag gcctgaaccc ctgtttcaac      1860
     ctcagccctg gggtgagtgg ggaaagagca ttgcatggct ccattgctaa aggaagctca      1920
     gatcaactct gttctttatc agcctgagat tcagcctctc accgttgttt ttctctcctg      1980
     ggtcttaaag gaagggggcc agcaacctgg gattactgtt tttacctcca cagggttcct      2040
     gaccttgcct aaaagactaa tgtaccttgg aacaagcatt ttctgtttct ttagtcccag      2100
     tatctgcttc gaggacagac ccccagcctc ccaagaggat gctgctgctg agtagttgca      2160
     ctgaagccag tttctatgat tctgttcctg gattcaatgc atgatttctc tcatggggcc      2220
     tccaaccaag ttcctttctc cttagtgcca tgaataatca aaacccaaca tgattgtttt      2280
     ctgttaagaa tatataccaa gtcatgtctc atcacttttt tttcttgagg gttttggcaa      2340
     acagtaagag                                                             2350
//