Dbfetch
ID AH002898; SV 2; linear; genomic DNA; STD; HUM; 2350 BP.
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AC AH002898; M21391-M21394;
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DT 26-APR-2017 (Rel. 132, Created)
DT 26-APR-2017 (Rel. 132, Last updated, Version 1)
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DE Human (clone H1A) MHC class II HLA-SX3-beta pseudogene.
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KW .
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OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
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RN [1]
RP 1-2350
RX DOI; 10.1007/BF00372291.
RX PUBMED; 3015787.
RA Kappes D.J., Strominger J.L.;
RT "Structure and evolution of the HLA class II SX beta gene";
RL Immunogenetics 24(1):1-7(1986).
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DR MD5; dd25396a72730288fa708a8854db4e37.
DR IMGT/HLA; HLA-DPB2*01:01:01; HLA14837.
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CC On or before Apr 24, 2017 this sequence version replaced M21391.1,
CC M21392.1, M21393.1, M21394.1, AH002898.1.
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FH Key Location/Qualifiers
FH
FT source 1..2350
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /haplotype="DR4/4, DQw3/w3, DP3/4"
FT /cell_type="B-cell"
FT /db_xref="taxon:9606"
FT gene 274..1735
FT /pseudo
FT /gene="MHC II HLA-SX3-beta"
FT CDS join(274..373,497..760,880..1160,1285..1395,1716..1735)
FT /pseudo
FT /codon_start=1
FT /gene="MHC II HLA-SX3-beta"
FT /product="MHC class II HLA-SX3-beta"
FT exon 274..373
FT /pseudo
FT /gene="MHC II HLA-SX3-beta"
FT /number=1
FT gap 389..488
FT /estimated_length=unknown
FT exon 497..760
FT /pseudo
FT /gene="MHC II HLA-SX3-beta"
FT /number=2
FT gap 772..871
FT /estimated_length=unknown
FT exon 880..1160
FT /pseudo
FT /gene="MHC II HLA-SX3-beta"
FT /number=3
FT gap 1172..1271
FT /estimated_length=unknown
FT exon 1285..1395
FT /pseudo
FT /gene="MHC II HLA-SX3-beta"
FT /number=4
FT exon 1716..1735
FT /pseudo
FT /gene="MHC II HLA-SX3-beta"
FT /number=5
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SQ Sequence 2350 BP; 498 A; 504 C; 516 G; 532 T; 300 other;
gttaaaatga gtgtcagtgt tctccatctg tcctcgtaac agcatcactg gctctatatt 60
gtcagatctt taatactaac tttctgccca gtgagcaatg actcatacaa agctcagtgc 120
ccattggttc ttttctcaga gtctgtccaa tcctggggtc acgggggact acttgggttc 180
atggtctcta atatttcaga caggagctcc ctttaatgag ttcttgtttt cctgactgca 240
gctctcttca ttctgccaac cttttccaac tccatgatga tcctgcaggt ttcagggggc 300
ccctggacag tggctctgac agcattactg atggtgctgc tcatatctgt ggtccagagc 360
agggccactc caggtaagag cagagctgnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 420
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 480
nnnnnnnnct tcacagagaa ttccgtctac caggaacggc aggaatgcta tgcgttcaat 540
gggactcagc gcgttgtgga cgggctcatc tacaaccggg aggaatacgt gcattttgac 600
agcgcagtgg gggagttcct agcagtgatg gagctggggc ggcccatagg cgagtacttc 660
aatagccaga aggactttat ggaacggaag cgagccgagg tggacaaggt gtgcagacac 720
aagtacgagc tgatggagcc actcatccgg cagcgccgag gtgagggctg gnnnnnnnnn 780
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 840
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nactcctagt ccagcctagg gtgaacatcc 900
cccctccaag aaggagcccc ggcagcacca cgacctgctt gtctaccacg tgacagattt 960
ctacccaggc agcattcaag tccgatgctt cctgaatgga caggaggaaa cagctggggt 1020
catgtccacc aagctgatcc gtaatgaaga ctggaccttc cagatcctgg agatgctgga 1080
aatgatcccc cagcagggaa acatctacac ctgccaagtg aagcacccca gcctggacag 1140
tcctgtcacc gtggagtgga gtgagggtct gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1200
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1260
nnnnnnnnnn nctgttcttc ctagaggcac agtctgattt tgtgcagagc aagatgctga 1320
caggagccag gggcttcatg ctggggctca tcatctgtgg agtggacatc ttcacgcaca 1380
gaaggagcaa gaaaggtgag aaatcctgtg aggtgaccga tacccacctt tctcctgact 1440
tgctcaccct tcttccatga tgaggggctg agacaaaaaa gcaatgccag agagcttgct 1500
gaaatcacat agtcaggaaa caaagacagc ttctaaggag agaggaatcc cagcctggca 1560
tcttaatgca gccagatgca taaggtcgca gttactcagg ctcctgcaga gcgtccattg 1620
agtgatgggc aatggaagtg tgatggaaac atttctctaa ttgtctgagg tggtttcagt 1680
agctgaatac attctctttc ttcctttcat ttcagttcaa caaggatctg cataaacagg 1740
caatattcct gctttgattt ccttgttggg ggagttacag gaggacataa gtcctttctg 1800
tacattgtga cactgagctc ctctaggaag agagtctcag gcctgaaccc ctgtttcaac 1860
ctcagccctg gggtgagtgg ggaaagagca ttgcatggct ccattgctaa aggaagctca 1920
gatcaactct gttctttatc agcctgagat tcagcctctc accgttgttt ttctctcctg 1980
ggtcttaaag gaagggggcc agcaacctgg gattactgtt tttacctcca cagggttcct 2040
gaccttgcct aaaagactaa tgtaccttgg aacaagcatt ttctgtttct ttagtcccag 2100
tatctgcttc gaggacagac ccccagcctc ccaagaggat gctgctgctg agtagttgca 2160
ctgaagccag tttctatgat tctgttcctg gattcaatgc atgatttctc tcatggggcc 2220
tccaaccaag ttcctttctc cttagtgcca tgaataatca aaacccaaca tgattgtttt 2280
ctgttaagaa tatataccaa gtcatgtctc atcacttttt tttcttgagg gttttggcaa 2340
acagtaagag 2350
//